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org.biomage.Array
Class ManufactureLIMSBiomaterial  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Array.ManufactureLIMS
              org.biomage.Array.ManufactureLIMSBiomaterial

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasBioMaterial, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasFeature, org.biomage.Interface.HasIdentifierLIMS, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

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public class ManufactureLIMSBiomaterial

extends ManufactureLIMS

implements java.io.Serializable

Stores the location from which a biomaterial was obtained.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
(package private)  java.lang.String	bioMaterialPlateCol           The plate column from which a biomaterial was obtained.
(package private)  java.lang.String	bioMaterialPlateIdentifier           The plate from which a biomaterial was obtained.
(package private)  java.lang.String	bioMaterialPlateRow           The plate row from which a biomaterial was obtained.

 

Fields inherited from class org.biomage.Array.ManufactureLIMS

quality

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ManufactureLIMSBiomaterial()           Default constructor.

ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
java.lang.String	getBioMaterialPlateCol()           Get method for bioMaterialPlateCol
java.lang.String	getBioMaterialPlateIdentifier()           Get method for bioMaterialPlateIdentifier
java.lang.String	getBioMaterialPlateRow()           Get method for bioMaterialPlateRow
void	setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)           Set method for bioMaterialPlateCol
void	setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)           Set method for bioMaterialPlateIdentifier
void	setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)           Set method for bioMaterialPlateRow
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Array.ManufactureLIMS

getBioMaterial, getFeature, getIdentifierLIMS, getQuality, setBioMaterial, setFeature, setIdentifierLIMS, setQuality

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

bioMaterialPlateIdentifier

java.lang.String bioMaterialPlateIdentifier

The plate from which a biomaterial was obtained.

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bioMaterialPlateRow

java.lang.String bioMaterialPlateRow

The plate row from which a biomaterial was obtained. Specified by a letter.

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bioMaterialPlateCol

java.lang.String bioMaterialPlateCol

The plate column from which a biomaterial was obtained. Specified by a number.

Constructor Detail

ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial()

Default constructor.

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ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class ManufactureLIMS

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class ManufactureLIMS

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class ManufactureLIMS

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setBioMaterialPlateIdentifier

public void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)

Set method for bioMaterialPlateIdentifier

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getBioMaterialPlateIdentifier

public java.lang.String getBioMaterialPlateIdentifier()

Get method for bioMaterialPlateIdentifier

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setBioMaterialPlateRow

public void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)

Set method for bioMaterialPlateRow

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getBioMaterialPlateRow

public java.lang.String getBioMaterialPlateRow()

Get method for bioMaterialPlateRow

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setBioMaterialPlateCol

public void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)

Set method for bioMaterialPlateCol

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getBioMaterialPlateCol

public java.lang.String getBioMaterialPlateCol()

Get method for bioMaterialPlateCol

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ Array overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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