Docjar: A Java Source and Docuemnt Enginecom.*    java.*    javax.*    org.*    all    new    plug-in

Quick Search    Search Deep

org.biomage.Array
Class ManufactureLIMSBiomaterial  view ManufactureLIMSBiomaterial download ManufactureLIMSBiomaterial.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.Common.Describable
          extended byorg.biomage.Array.ManufactureLIMS
              extended byorg.biomage.Array.ManufactureLIMSBiomaterial
All Implemented Interfaces:
org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasBioMaterial, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasFeature, org.biomage.Interface.HasIdentifierLIMS, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

public class ManufactureLIMSBiomaterial
extends ManufactureLIMS
implements java.io.Serializable

Stores the location from which a biomaterial was obtained.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasAuditTrail
org.biomage.Interface.HasAuditTrail.AuditTrail_list
 
Nested classes inherited from class org.biomage.Interface.HasDescriptions
org.biomage.Interface.HasDescriptions.Descriptions_list
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
(package private)  java.lang.String bioMaterialPlateCol
          The plate column from which a biomaterial was obtained.
(package private)  java.lang.String bioMaterialPlateIdentifier
          The plate from which a biomaterial was obtained.
(package private)  java.lang.String bioMaterialPlateRow
          The plate row from which a biomaterial was obtained.
 
Fields inherited from class org.biomage.Array.ManufactureLIMS
quality
 
Fields inherited from class org.biomage.Common.Describable
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
ManufactureLIMSBiomaterial()
          Default constructor.
ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 java.lang.String getBioMaterialPlateCol()
          Get method for bioMaterialPlateCol
 java.lang.String getBioMaterialPlateIdentifier()
          Get method for bioMaterialPlateIdentifier
 java.lang.String getBioMaterialPlateRow()
          Get method for bioMaterialPlateRow
 void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)
          Set method for bioMaterialPlateCol
 void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)
          Set method for bioMaterialPlateIdentifier
 void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)
          Set method for bioMaterialPlateRow
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Array.ManufactureLIMS
getBioMaterial, getFeature, getIdentifierLIMS, getQuality, setBioMaterial, setFeature, setIdentifierLIMS, setQuality
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

bioMaterialPlateIdentifier

java.lang.String bioMaterialPlateIdentifier
The plate from which a biomaterial was obtained.


bioMaterialPlateRow

java.lang.String bioMaterialPlateRow
The plate row from which a biomaterial was obtained. Specified by a letter.


bioMaterialPlateCol

java.lang.String bioMaterialPlateCol
The plate column from which a biomaterial was obtained. Specified by a number.

Constructor Detail

ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial()
Default constructor.


ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class ManufactureLIMS

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class ManufactureLIMS

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class ManufactureLIMS

setBioMaterialPlateIdentifier

public void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)
Set method for bioMaterialPlateIdentifier


getBioMaterialPlateIdentifier

public java.lang.String getBioMaterialPlateIdentifier()
Get method for bioMaterialPlateIdentifier


setBioMaterialPlateRow

public void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)
Set method for bioMaterialPlateRow


getBioMaterialPlateRow

public java.lang.String getBioMaterialPlateRow()
Get method for bioMaterialPlateRow


setBioMaterialPlateCol

public void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)
Set method for bioMaterialPlateCol


getBioMaterialPlateCol

public java.lang.String getBioMaterialPlateCol()
Get method for bioMaterialPlateCol