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org.biomage.Array
Class PositionDelta  view PositionDelta download PositionDelta.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.Array.PositionDelta
All Implemented Interfaces:
org.biomage.Interface.HasDistanceUnit, org.biomage.Interface.HasPropertySets, java.io.Serializable

public class PositionDelta
extends org.biomage.Common.Extendable
implements java.io.Serializable, org.biomage.Interface.HasDistanceUnit

The delta the feature was actually printed on the array from the position specified for the feature in the array design.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
(package private)  float deltaX
          Deviation from the y coordinate of this feature's position.
(package private)  float deltaY
          Deviation from the y coordinate of this feature's position.
private  org.biomage.Measurement.DistanceUnit distanceUnit
          The unit for the attributes.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
PositionDelta()
          Default constructor.
PositionDelta(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 float getDeltaX()
          Get method for deltaX
 float getDeltaY()
          Get method for deltaY
 org.biomage.Measurement.DistanceUnit getDistanceUnit()
          Get method for distanceUnit
 void setDeltaX(float deltaX)
          Set method for deltaX
 void setDeltaY(float deltaY)
          Set method for deltaY
 void setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)
          Set method for distanceUnit
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

deltaX

float deltaX
Deviation from the y coordinate of this feature's position.


deltaY

float deltaY
Deviation from the y coordinate of this feature's position.


distanceUnit

private org.biomage.Measurement.DistanceUnit distanceUnit
The unit for the attributes.

Constructor Detail

PositionDelta

public PositionDelta()
Default constructor.


PositionDelta

public PositionDelta(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setDeltaX

public void setDeltaX(float deltaX)
Set method for deltaX


getDeltaX

public float getDeltaX()
Get method for deltaX


setDeltaY

public void setDeltaY(float deltaY)
Set method for deltaY


getDeltaY

public float getDeltaY()
Get method for deltaY


setDistanceUnit

public void setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)
Set method for distanceUnit

Specified by:
setDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

getDistanceUnit

public org.biomage.Measurement.DistanceUnit getDistanceUnit()
Get method for distanceUnit

Specified by:
getDistanceUnit in interface org.biomage.Interface.HasDistanceUnit