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org.biomage.ArrayDesign
Class ReporterGroup  view ReporterGroup download ReporterGroup.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.Common.Describable
          extended byorg.biomage.Common.Identifiable
              extended byorg.biomage.ArrayDesign.DesignElementGroup
                  extended byorg.biomage.ArrayDesign.ReporterGroup
All Implemented Interfaces:
org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasReporters, org.biomage.Interface.HasSecurity, org.biomage.Interface.HasSpecies, org.biomage.Interface.HasTypes, java.io.Serializable

public class ReporterGroup
extends DesignElementGroup
implements java.io.Serializable, org.biomage.Interface.HasReporters

Allows specification of the type of Reporter Design Element.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasReporters
org.biomage.Interface.HasReporters.Reporters_list
 
Nested classes inherited from class org.biomage.Interface.HasTypes
org.biomage.Interface.HasTypes.Types_list
 
Nested classes inherited from class org.biomage.Interface.HasAuditTrail
org.biomage.Interface.HasAuditTrail.AuditTrail_list
 
Nested classes inherited from class org.biomage.Interface.HasDescriptions
org.biomage.Interface.HasDescriptions.Descriptions_list
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  org.biomage.Interface.HasReporters.Reporters_list reporters
          The reporters that belong to this group.
 
Fields inherited from class org.biomage.ArrayDesign.DesignElementGroup
 
Fields inherited from class org.biomage.Common.Identifiable
 
Fields inherited from class org.biomage.Common.Describable
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
ReporterGroup()
          Default constructor.
ReporterGroup(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToReporters(int position, org.biomage.DesignElement.Reporter reporter)
          Method to add Reporter at position to Reporters_list
 void addToReporters(org.biomage.DesignElement.Reporter reporter)
          Method to add Reporter to Reporters_list
 org.biomage.DesignElement.Reporter getFromReporters(int position)
          Method to get Reporter from Reporters_list
 org.biomage.Interface.HasReporters.Reporters_list getReporters()
          Get method for reporters
 void removeElementAtFromReporters(int position)
          Method to remove by position from Reporters_list
 void removeFromReporters(org.biomage.DesignElement.Reporter reporter)
          Method to remove first Reporter from Reporters_list
 void setReporters(org.biomage.Interface.HasReporters.Reporters_list reporters)
          Set method for reporters
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.ArrayDesign.DesignElementGroup
addToTypes, addToTypes, getFromTypes, getSpecies, getTypes, removeElementAtFromTypes, removeFromTypes, setSpecies, setTypes
 
Methods inherited from class org.biomage.Common.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

reporters

private org.biomage.Interface.HasReporters.Reporters_list reporters
The reporters that belong to this group.

Constructor Detail

ReporterGroup

public ReporterGroup()
Default constructor.


ReporterGroup

public ReporterGroup(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class DesignElementGroup

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class DesignElementGroup

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class DesignElementGroup

setReporters

public void setReporters(org.biomage.Interface.HasReporters.Reporters_list reporters)
Set method for reporters

Specified by:
setReporters in interface org.biomage.Interface.HasReporters

getReporters

public org.biomage.Interface.HasReporters.Reporters_list getReporters()
Get method for reporters

Specified by:
getReporters in interface org.biomage.Interface.HasReporters

addToReporters

public void addToReporters(org.biomage.DesignElement.Reporter reporter)
Method to add Reporter to Reporters_list

Specified by:
addToReporters in interface org.biomage.Interface.HasReporters

addToReporters

public void addToReporters(int position,
                           org.biomage.DesignElement.Reporter reporter)
Method to add Reporter at position to Reporters_list

Specified by:
addToReporters in interface org.biomage.Interface.HasReporters

getFromReporters

public org.biomage.DesignElement.Reporter getFromReporters(int position)
Method to get Reporter from Reporters_list

Specified by:
getFromReporters in interface org.biomage.Interface.HasReporters

removeElementAtFromReporters

public void removeElementAtFromReporters(int position)
Method to remove by position from Reporters_list

Specified by:
removeElementAtFromReporters in interface org.biomage.Interface.HasReporters

removeFromReporters

public void removeFromReporters(org.biomage.DesignElement.Reporter reporter)
Method to remove first Reporter from Reporters_list

Specified by:
removeFromReporters in interface org.biomage.Interface.HasReporters