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org.biomage.ArrayDesign
Class ZoneGroup  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.ArrayDesign.ZoneGroup

All Implemented Interfaces:

org.biomage.Interface.HasDistanceUnit, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasZoneLayout, org.biomage.Interface.HasZoneLocations, java.io.Serializable

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public class ZoneGroup

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasZoneLayout, org.biomage.Interface.HasZoneLocations, org.biomage.Interface.HasDistanceUnit

Specifies a repeating area on an array. This is useful for printing when the same pattern is repeated in a regular fashion.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasZoneLocations

org.biomage.Interface.HasZoneLocations.ZoneLocations_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Measurement.DistanceUnit	distanceUnit           Unit for the ZoneGroup attributes.
(package private)  float	spacingsBetweenZonesX           Spacing between zones, if applicable.
(package private)  float	spacingsBetweenZonesY           Spacing between zones, if applicable.
private  ZoneLayout	zoneLayout           Describes the rectangular layout of features in the array design.
private  org.biomage.Interface.HasZoneLocations.ZoneLocations_list	zoneLocations           Describes the location of different zones within the array design.
(package private)  int	zonesPerX           The number of zones on the x-axis.
(package private)  int	zonesPerY           The number of zones on the y-axis.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ZoneGroup()           Default constructor.

ZoneGroup(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToZoneLocations(int position, Zone zone)           Method to add Zone at position to ZoneLocations_list
void	addToZoneLocations(Zone zone)           Method to add Zone to ZoneLocations_list
org.biomage.Measurement.DistanceUnit	getDistanceUnit()           Get method for distanceUnit
Zone	getFromZoneLocations(int position)           Method to get Zone from ZoneLocations_list
float	getSpacingsBetweenZonesX()           Get method for spacingsBetweenZonesX
float	getSpacingsBetweenZonesY()           Get method for spacingsBetweenZonesY
ZoneLayout	getZoneLayout()           Get method for zoneLayout
org.biomage.Interface.HasZoneLocations.ZoneLocations_list	getZoneLocations()           Get method for zoneLocations
int	getZonesPerX()           Get method for zonesPerX
int	getZonesPerY()           Get method for zonesPerY
void	removeElementAtFromZoneLocations(int position)           Method to remove by position from ZoneLocations_list
void	removeFromZoneLocations(Zone zone)           Method to remove first Zone from ZoneLocations_list
void	setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)           Set method for distanceUnit
void	setSpacingsBetweenZonesX(float spacingsBetweenZonesX)           Set method for spacingsBetweenZonesX
void	setSpacingsBetweenZonesY(float spacingsBetweenZonesY)           Set method for spacingsBetweenZonesY
void	setZoneLayout(ZoneLayout zoneLayout)           Set method for zoneLayout
void	setZoneLocations(org.biomage.Interface.HasZoneLocations.ZoneLocations_list zoneLocations)           Set method for zoneLocations
void	setZonesPerX(int zonesPerX)           Set method for zonesPerX
void	setZonesPerY(int zonesPerY)           Set method for zonesPerY
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

spacingsBetweenZonesX

float spacingsBetweenZonesX

Spacing between zones, if applicable.

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spacingsBetweenZonesY

float spacingsBetweenZonesY

Spacing between zones, if applicable.

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zonesPerX

int zonesPerX

The number of zones on the x-axis.

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zonesPerY

int zonesPerY

The number of zones on the y-axis.

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zoneLayout

private ZoneLayout zoneLayout

Describes the rectangular layout of features in the array design.

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zoneLocations

private org.biomage.Interface.HasZoneLocations.ZoneLocations_list zoneLocations

Describes the location of different zones within the array design.

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distanceUnit

private org.biomage.Measurement.DistanceUnit distanceUnit

Unit for the ZoneGroup attributes.

Constructor Detail

ZoneGroup

public ZoneGroup()

Default constructor.

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ZoneGroup

public ZoneGroup(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setSpacingsBetweenZonesX

public void setSpacingsBetweenZonesX(float spacingsBetweenZonesX)

Set method for spacingsBetweenZonesX

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getSpacingsBetweenZonesX

public float getSpacingsBetweenZonesX()

Get method for spacingsBetweenZonesX

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setSpacingsBetweenZonesY

public void setSpacingsBetweenZonesY(float spacingsBetweenZonesY)

Set method for spacingsBetweenZonesY

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getSpacingsBetweenZonesY

public float getSpacingsBetweenZonesY()

Get method for spacingsBetweenZonesY

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setZonesPerX

public void setZonesPerX(int zonesPerX)

Set method for zonesPerX

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getZonesPerX

public int getZonesPerX()

Get method for zonesPerX

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setZonesPerY

public void setZonesPerY(int zonesPerY)

Set method for zonesPerY

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getZonesPerY

public int getZonesPerY()

Get method for zonesPerY

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setZoneLayout

public void setZoneLayout(ZoneLayout zoneLayout)

Set method for zoneLayout

Specified by:

setZoneLayout in interface org.biomage.Interface.HasZoneLayout

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getZoneLayout

public ZoneLayout getZoneLayout()

Get method for zoneLayout

Specified by:

getZoneLayout in interface org.biomage.Interface.HasZoneLayout

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setZoneLocations

public void setZoneLocations(org.biomage.Interface.HasZoneLocations.ZoneLocations_list zoneLocations)

Set method for zoneLocations

Specified by:

setZoneLocations in interface org.biomage.Interface.HasZoneLocations

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getZoneLocations

public org.biomage.Interface.HasZoneLocations.ZoneLocations_list getZoneLocations()

Get method for zoneLocations

Specified by:

getZoneLocations in interface org.biomage.Interface.HasZoneLocations

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addToZoneLocations

public void addToZoneLocations(Zone zone)

Method to add Zone to ZoneLocations_list

Specified by:

addToZoneLocations in interface org.biomage.Interface.HasZoneLocations

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addToZoneLocations

public void addToZoneLocations(int position,
                               Zone zone)

Method to add Zone at position to ZoneLocations_list

Specified by:

addToZoneLocations in interface org.biomage.Interface.HasZoneLocations

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getFromZoneLocations

public Zone getFromZoneLocations(int position)

Method to get Zone from ZoneLocations_list

Specified by:

getFromZoneLocations in interface org.biomage.Interface.HasZoneLocations

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removeElementAtFromZoneLocations

public void removeElementAtFromZoneLocations(int position)

Method to remove by position from ZoneLocations_list

Specified by:

removeElementAtFromZoneLocations in interface org.biomage.Interface.HasZoneLocations

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removeFromZoneLocations

public void removeFromZoneLocations(Zone zone)

Method to remove first Zone from ZoneLocations_list

Specified by:

removeFromZoneLocations in interface org.biomage.Interface.HasZoneLocations

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setDistanceUnit

public void setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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getDistanceUnit

public org.biomage.Measurement.DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ ArrayDesign overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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