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org.biomage.AuditAndSecurity
Class Organization  view Organization download Organization.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.Common.Describable
          extended byorg.biomage.Common.Identifiable
              extended byorg.biomage.AuditAndSecurity.Contact
                  extended byorg.biomage.AuditAndSecurity.Organization
All Implemented Interfaces:
org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasParent, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasRoles, org.biomage.Interface.HasSecurity, java.io.Serializable

public class Organization
extends Contact
implements java.io.Serializable, org.biomage.Interface.HasParent

Organizations are entities like companies, universities, government agencies for which the attributes are self describing.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasRoles
org.biomage.Interface.HasRoles.Roles_list
 
Nested classes inherited from class org.biomage.Interface.HasAuditTrail
org.biomage.Interface.HasAuditTrail.AuditTrail_list
 
Nested classes inherited from class org.biomage.Interface.HasDescriptions
org.biomage.Interface.HasDescriptions.Descriptions_list
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  Organization parent
          The containing organization (the university or business which a lab belongs to, etc.)
 
Fields inherited from class org.biomage.AuditAndSecurity.Contact
address, email, fax, phone, tollFreePhone, URI
 
Fields inherited from class org.biomage.Common.Identifiable
 
Fields inherited from class org.biomage.Common.Describable
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
Organization()
          Default constructor.
Organization(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 Organization getParent()
          Get method for parent
 void setParent(Organization parent)
          Set method for parent
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.AuditAndSecurity.Contact
addToRoles, addToRoles, getAddress, getEmail, getFax, getFromRoles, getPhone, getRoles, getTollFreePhone, getURI, removeElementAtFromRoles, removeFromRoles, setAddress, setEmail, setFax, setPhone, setRoles, setTollFreePhone, setURI
 
Methods inherited from class org.biomage.Common.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

parent

private Organization parent
The containing organization (the university or business which a lab belongs to, etc.)

Constructor Detail

Organization

public Organization()
Default constructor.


Organization

public Organization(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Contact

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Contact

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Contact

setParent

public void setParent(Organization parent)
Set method for parent

Specified by:
setParent in interface org.biomage.Interface.HasParent

getParent

public Organization getParent()
Get method for parent

Specified by:
getParent in interface org.biomage.Interface.HasParent