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DETAIL: FIELD | CONSTR | METHOD |
org.biomage.BioAssayData
Class BioAssayData_package

java.lang.Objectorg.biomage.BioAssayData.BioAssayData_package
- All Implemented Interfaces:
- java.io.Serializable
- public class BioAssayData_package
- extends java.lang.Object
- implements java.io.Serializable
- extends java.lang.Object
The classes defined here provide data and the information and annotation on the derivation of that data. Some of the scenarios that might occur are the following. FeatureExtraction of a single PhysicalBioAssay produces MeasuredBioAssayData that has a single BioAssay on the BioAssayDimension, typically the Features described in the ArrayDesign on the DesignElementDimension, and the Quantitations associated with the application of a FeatureExtraction protocol on the QuantitationDimension. An error model transformation might be applied that doesn't change the BioAssayDimension or the DesignElementDimension but likely changes the QuantitationDimension. A transformation on replicate Reporters or CompositeSequences might be applied on the single BioAssay that would change the DesignElementDimension and the QuantitationDimension both. Replicate and Control BioAssays might be added to the BioAssayDimension and a transformation could change the BioAssayDimension and the QuantitationDimension but not change the DesignElementDimension to produce a new DerivedBioAssayData. Or some combination of the above transformations could be performed at once to change all three dimensions. Because the classes derive from Describable, the Experimenter can provide as much detail at each level of the class hierarchy as desired.
Nested Class Summary | |
class |
BioAssayData_package.BioAssayData_list
Inner list class for holding multiple entries for attribute bioAssayData_list. |
class |
BioAssayData_package.BioAssayDimension_list
Inner list class for holding multiple entries for attribute bioAssayDimension_list. |
class |
BioAssayData_package.BioAssayMap_list
Inner list class for holding multiple entries for attribute bioAssayMap_list. |
class |
BioAssayData_package.CompositeSequenceDimension_list
Inner list class for holding multiple entries for attribute compositeSequenceDimension_list. |
class |
BioAssayData_package.DerivedBioAssayData_list
Inner list class for holding multiple entries for attribute derivedBioAssayData_list. |
class |
BioAssayData_package.DesignElementDimension_list
Inner list class for holding multiple entries for attribute designElementDimension_list. |
class |
BioAssayData_package.DesignElementMap_list
Inner list class for holding multiple entries for attribute designElementMap_list. |
class |
BioAssayData_package.FeatureDimension_list
Inner list class for holding multiple entries for attribute featureDimension_list. |
class |
BioAssayData_package.MeasuredBioAssayData_list
Inner list class for holding multiple entries for attribute measuredBioAssayData_list. |
class |
BioAssayData_package.QuantitationTypeDimension_list
Inner list class for holding multiple entries for attribute quantitationTypeDimension_list. |
class |
BioAssayData_package.QuantitationTypeMap_list
Inner list class for holding multiple entries for attribute quantitationTypeMap_list. |
class |
BioAssayData_package.ReporterDimension_list
Inner list class for holding multiple entries for attribute reporterDimension_list. |
Field Summary | |
BioAssayData_package.BioAssayData_list |
bioAssayData_list
Represents the dataset created when the BioAssays are created. |
BioAssayData_package.BioAssayDimension_list |
bioAssayDimension_list
An ordered list of bioAssays. |
BioAssayData_package.BioAssayMap_list |
bioAssayMap_list
The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays. |
BioAssayData_package.CompositeSequenceDimension_list |
compositeSequenceDimension_list
Specialized DesignElementDimension to hold CompositeSequences. |
BioAssayData_package.DerivedBioAssayData_list |
derivedBioAssayData_list
The output of a transformation event. |
BioAssayData_package.DesignElementDimension_list |
designElementDimension_list
An ordered list of designElements. |
BioAssayData_package.DesignElementMap_list |
designElementMap_list
A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement. |
BioAssayData_package.FeatureDimension_list |
featureDimension_list
Specialized DesignElementDimension to hold Features. |
BioAssayData_package.MeasuredBioAssayData_list |
measuredBioAssayData_list
The data associated with the MeasuredBioAssay produced by FeatureExtraction. |
BioAssayData_package.QuantitationTypeDimension_list |
quantitationTypeDimension_list
An ordered list of quantitationTypes. |
BioAssayData_package.QuantitationTypeMap_list |
quantitationTypeMap_list
A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType. |
BioAssayData_package.ReporterDimension_list |
reporterDimension_list
Specialized DesignElementDimension to hold Reporters. |
Constructor Summary | |
BioAssayData_package()
Default constructor. |
|
BioAssayData_package(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
void |
addToBioAssayData_list(BioAssayData bioAssayData)
Method to add BioAssayData to BioAssayData_list |
void |
addToBioAssayData_list(int position,
BioAssayData bioAssayData)
Method to add BioAssayData at position to BioAssayData_list |
void |
addToBioAssayDimension_list(BioAssayDimension bioAssayDimension)
Method to add BioAssayDimension to BioAssayDimension_list |
void |
addToBioAssayDimension_list(int position,
BioAssayDimension bioAssayDimension)
Method to add BioAssayDimension at position to BioAssayDimension_list |
void |
addToBioAssayMap_list(BioAssayMap bioAssayMap)
Method to add BioAssayMap to BioAssayMap_list |
void |
addToBioAssayMap_list(int position,
BioAssayMap bioAssayMap)
Method to add BioAssayMap at position to BioAssayMap_list |
void |
addToCompositeSequenceDimension_list(CompositeSequenceDimension compositeSequenceDimension)
Method to add CompositeSequenceDimension to CompositeSequenceDimension_list |
void |
addToCompositeSequenceDimension_list(int position,
CompositeSequenceDimension compositeSequenceDimension)
Method to add CompositeSequenceDimension at position to CompositeSequenceDimension_list |
void |
addToDerivedBioAssayData_list(DerivedBioAssayData derivedBioAssayData)
Method to add DerivedBioAssayData to DerivedBioAssayData_list |
void |
addToDerivedBioAssayData_list(int position,
DerivedBioAssayData derivedBioAssayData)
Method to add DerivedBioAssayData at position to DerivedBioAssayData_list |
void |
addToDesignElementDimension_list(DesignElementDimension designElementDimension)
Method to add DesignElementDimension to DesignElementDimension_list |
void |
addToDesignElementDimension_list(int position,
DesignElementDimension designElementDimension)
Method to add DesignElementDimension at position to DesignElementDimension_list |
void |
addToDesignElementMap_list(DesignElementMap designElementMap)
Method to add DesignElementMap to DesignElementMap_list |
void |
addToDesignElementMap_list(int position,
DesignElementMap designElementMap)
Method to add DesignElementMap at position to DesignElementMap_list |
void |
addToFeatureDimension_list(FeatureDimension featureDimension)
Method to add FeatureDimension to FeatureDimension_list |
void |
addToFeatureDimension_list(int position,
FeatureDimension featureDimension)
Method to add FeatureDimension at position to FeatureDimension_list |
void |
addToMeasuredBioAssayData_list(int position,
MeasuredBioAssayData measuredBioAssayData)
Method to add MeasuredBioAssayData at position to MeasuredBioAssayData_list |
void |
addToMeasuredBioAssayData_list(MeasuredBioAssayData measuredBioAssayData)
Method to add MeasuredBioAssayData to MeasuredBioAssayData_list |
void |
addToQuantitationTypeDimension_list(int position,
QuantitationTypeDimension quantitationTypeDimension)
Method to add QuantitationTypeDimension at position to QuantitationTypeDimension_list |
void |
addToQuantitationTypeDimension_list(QuantitationTypeDimension quantitationTypeDimension)
Method to add QuantitationTypeDimension to QuantitationTypeDimension_list |
void |
addToQuantitationTypeMap_list(int position,
QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap at position to QuantitationTypeMap_list |
void |
addToQuantitationTypeMap_list(QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap to QuantitationTypeMap_list |
void |
addToReporterDimension_list(int position,
ReporterDimension reporterDimension)
Method to add ReporterDimension at position to ReporterDimension_list |
void |
addToReporterDimension_list(ReporterDimension reporterDimension)
Method to add ReporterDimension to ReporterDimension_list |
BioAssayData_package.BioAssayData_list |
getBioAssayData_list()
Get method for bioAssayData_list |
BioAssayData_package.BioAssayDimension_list |
getBioAssayDimension_list()
Get method for bioAssayDimension_list |
BioAssayData_package.BioAssayMap_list |
getBioAssayMap_list()
Get method for bioAssayMap_list |
BioAssayData_package.CompositeSequenceDimension_list |
getCompositeSequenceDimension_list()
Get method for compositeSequenceDimension_list |
BioAssayData_package.DerivedBioAssayData_list |
getDerivedBioAssayData_list()
Get method for derivedBioAssayData_list |
BioAssayData_package.DesignElementDimension_list |
getDesignElementDimension_list()
Get method for designElementDimension_list |
BioAssayData_package.DesignElementMap_list |
getDesignElementMap_list()
Get method for designElementMap_list |
BioAssayData_package.FeatureDimension_list |
getFeatureDimension_list()
Get method for featureDimension_list |
BioAssayData |
getFromBioAssayData_list(int position)
Method to get BioAssayData from BioAssayData_list |
BioAssayDimension |
getFromBioAssayDimension_list(int position)
Method to get BioAssayDimension from BioAssayDimension_list |
BioAssayMap |
getFromBioAssayMap_list(int position)
Method to get BioAssayMap from BioAssayMap_list |
CompositeSequenceDimension |
getFromCompositeSequenceDimension_list(int position)
Method to get CompositeSequenceDimension from CompositeSequenceDimension_list |
DerivedBioAssayData |
getFromDerivedBioAssayData_list(int position)
Method to get DerivedBioAssayData from DerivedBioAssayData_list |
DesignElementDimension |
getFromDesignElementDimension_list(int position)
Method to get DesignElementDimension from DesignElementDimension_list |
DesignElementMap |
getFromDesignElementMap_list(int position)
Method to get DesignElementMap from DesignElementMap_list |
FeatureDimension |
getFromFeatureDimension_list(int position)
Method to get FeatureDimension from FeatureDimension_list |
MeasuredBioAssayData |
getFromMeasuredBioAssayData_list(int position)
Method to get MeasuredBioAssayData from MeasuredBioAssayData_list |
QuantitationTypeDimension |
getFromQuantitationTypeDimension_list(int position)
Method to get QuantitationTypeDimension from QuantitationTypeDimension_list |
QuantitationTypeMap |
getFromQuantitationTypeMap_list(int position)
Method to get QuantitationTypeMap from QuantitationTypeMap_list |
ReporterDimension |
getFromReporterDimension_list(int position)
Method to get ReporterDimension from ReporterDimension_list |
BioAssayData_package.MeasuredBioAssayData_list |
getMeasuredBioAssayData_list()
Get method for measuredBioAssayData_list |
BioAssayData_package.QuantitationTypeDimension_list |
getQuantitationTypeDimension_list()
Get method for quantitationTypeDimension_list |
BioAssayData_package.QuantitationTypeMap_list |
getQuantitationTypeMap_list()
Get method for quantitationTypeMap_list |
BioAssayData_package.ReporterDimension_list |
getReporterDimension_list()
Get method for reporterDimension_list |
void |
removeElementAtFromBioAssayData_list(int position)
Method to remove by position from BioAssayData_list |
void |
removeElementAtFromBioAssayDimension_list(int position)
Method to remove by position from BioAssayDimension_list |
void |
removeElementAtFromBioAssayMap_list(int position)
Method to remove by position from BioAssayMap_list |
void |
removeElementAtFromCompositeSequenceDimension_list(int position)
Method to remove by position from CompositeSequenceDimension_list |
void |
removeElementAtFromDerivedBioAssayData_list(int position)
Method to remove by position from DerivedBioAssayData_list |
void |
removeElementAtFromDesignElementDimension_list(int position)
Method to remove by position from DesignElementDimension_list |
void |
removeElementAtFromDesignElementMap_list(int position)
Method to remove by position from DesignElementMap_list |
void |
removeElementAtFromFeatureDimension_list(int position)
Method to remove by position from FeatureDimension_list |
void |
removeElementAtFromMeasuredBioAssayData_list(int position)
Method to remove by position from MeasuredBioAssayData_list |
void |
removeElementAtFromQuantitationTypeDimension_list(int position)
Method to remove by position from QuantitationTypeDimension_list |
void |
removeElementAtFromQuantitationTypeMap_list(int position)
Method to remove by position from QuantitationTypeMap_list |
void |
removeElementAtFromReporterDimension_list(int position)
Method to remove by position from ReporterDimension_list |
void |
removeFromBioAssayData_list(BioAssayData bioAssayData)
Method to remove first BioAssayData from BioAssayData_list |
void |
removeFromBioAssayDimension_list(BioAssayDimension bioAssayDimension)
Method to remove first BioAssayDimension from BioAssayDimension_list |
void |
removeFromBioAssayMap_list(BioAssayMap bioAssayMap)
Method to remove first BioAssayMap from BioAssayMap_list |
void |
removeFromCompositeSequenceDimension_list(CompositeSequenceDimension compositeSequenceDimension)
Method to remove first CompositeSequenceDimension from CompositeSequenceDimension_list |
void |
removeFromDerivedBioAssayData_list(DerivedBioAssayData derivedBioAssayData)
Method to remove first DerivedBioAssayData from DerivedBioAssayData_list |
void |
removeFromDesignElementDimension_list(DesignElementDimension designElementDimension)
Method to remove first DesignElementDimension from DesignElementDimension_list |
void |
removeFromDesignElementMap_list(DesignElementMap designElementMap)
Method to remove first DesignElementMap from DesignElementMap_list |
void |
removeFromFeatureDimension_list(FeatureDimension featureDimension)
Method to remove first FeatureDimension from FeatureDimension_list |
void |
removeFromMeasuredBioAssayData_list(MeasuredBioAssayData measuredBioAssayData)
Method to remove first MeasuredBioAssayData from MeasuredBioAssayData_list |
void |
removeFromQuantitationTypeDimension_list(QuantitationTypeDimension quantitationTypeDimension)
Method to remove first QuantitationTypeDimension from QuantitationTypeDimension_list |
void |
removeFromQuantitationTypeMap_list(QuantitationTypeMap quantitationTypeMap)
Method to remove first QuantitationTypeMap from QuantitationTypeMap_list |
void |
removeFromReporterDimension_list(ReporterDimension reporterDimension)
Method to remove first ReporterDimension from ReporterDimension_list |
void |
setBioAssayData_list(BioAssayData_package.BioAssayData_list bioAssayData_list)
Set method for bioAssayData_list |
void |
setBioAssayDimension_list(BioAssayData_package.BioAssayDimension_list bioAssayDimension_list)
Set method for bioAssayDimension_list |
void |
setBioAssayMap_list(BioAssayData_package.BioAssayMap_list bioAssayMap_list)
Set method for bioAssayMap_list |
void |
setCompositeSequenceDimension_list(BioAssayData_package.CompositeSequenceDimension_list compositeSequenceDimension_list)
Set method for compositeSequenceDimension_list |
void |
setDerivedBioAssayData_list(BioAssayData_package.DerivedBioAssayData_list derivedBioAssayData_list)
Set method for derivedBioAssayData_list |
void |
setDesignElementDimension_list(BioAssayData_package.DesignElementDimension_list designElementDimension_list)
Set method for designElementDimension_list |
void |
setDesignElementMap_list(BioAssayData_package.DesignElementMap_list designElementMap_list)
Set method for designElementMap_list |
void |
setFeatureDimension_list(BioAssayData_package.FeatureDimension_list featureDimension_list)
Set method for featureDimension_list |
void |
setMeasuredBioAssayData_list(BioAssayData_package.MeasuredBioAssayData_list measuredBioAssayData_list)
Set method for measuredBioAssayData_list |
void |
setQuantitationTypeDimension_list(BioAssayData_package.QuantitationTypeDimension_list quantitationTypeDimension_list)
Set method for quantitationTypeDimension_list |
void |
setQuantitationTypeMap_list(BioAssayData_package.QuantitationTypeMap_list quantitationTypeMap_list)
Set method for quantitationTypeMap_list |
void |
setReporterDimension_list(BioAssayData_package.ReporterDimension_list reporterDimension_list)
Set method for reporterDimension_list |
void |
writeAssociations(java.io.Writer out)
writeAssociations |
void |
writeAttributes(java.io.Writer out)
writeAttributes |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
bioAssayData_list
public BioAssayData_package.BioAssayData_list bioAssayData_list
- Represents the dataset created when the BioAssays are created.
BioAssayData is the entry point to the values. Because the actual
values are represented by a different object, BioDataValues, which
can be memory intensive, the annotation of the transformation can be
gotten separate from the data.
quantitationTypeDimension_list
public BioAssayData_package.QuantitationTypeDimension_list quantitationTypeDimension_list
- An ordered list of quantitationTypes.
designElementDimension_list
public BioAssayData_package.DesignElementDimension_list designElementDimension_list
- An ordered list of designElements. It will be realized as one of
its three subclasses.
derivedBioAssayData_list
public BioAssayData_package.DerivedBioAssayData_list derivedBioAssayData_list
- The output of a transformation event.
measuredBioAssayData_list
public BioAssayData_package.MeasuredBioAssayData_list measuredBioAssayData_list
- The data associated with the MeasuredBioAssay produced by
FeatureExtraction.
bioAssayDimension_list
public BioAssayData_package.BioAssayDimension_list bioAssayDimension_list
- An ordered list of bioAssays.
quantitationTypeMap_list
public BioAssayData_package.QuantitationTypeMap_list quantitationTypeMap_list
- A QuantitationTypeMap is the description of how source
QuantitationTypes are mathematically transformed into a target
QuantitationType.
designElementMap_list
public BioAssayData_package.DesignElementMap_list designElementMap_list
- A DesignElementMap is the description of how source
DesignElements are transformed into a target DesignElement.
bioAssayMap_list
public BioAssayData_package.BioAssayMap_list bioAssayMap_list
- The BioAssayMap is the description of how source
MeasuredBioAssays and/or DerivedBioAssays are manipulated
(mathematically) to produce DerivedBioAssays.
compositeSequenceDimension_list
public BioAssayData_package.CompositeSequenceDimension_list compositeSequenceDimension_list
- Specialized DesignElementDimension to hold CompositeSequences.
reporterDimension_list
public BioAssayData_package.ReporterDimension_list reporterDimension_list
- Specialized DesignElementDimension to hold Reporters.
featureDimension_list
public BioAssayData_package.FeatureDimension_list featureDimension_list
- Specialized DesignElementDimension to hold Features.
Constructor Detail |
BioAssayData_package
public BioAssayData_package()
- Default constructor.
BioAssayData_package
public BioAssayData_package(org.xml.sax.Attributes atts)
- Attribute constructor.
Looks up the attributes in the parameter and casts them from strings
appropriately
Method Detail |
writeMAGEML
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
- writeMAGEML
This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.
writeAttributes
public void writeAttributes(java.io.Writer out) throws java.io.IOException
- writeAttributes
This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.
writeAssociations
public void writeAssociations(java.io.Writer out) throws java.io.IOException
- writeAssociations
This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.
setBioAssayData_list
public void setBioAssayData_list(BioAssayData_package.BioAssayData_list bioAssayData_list)
- Set method for bioAssayData_list
getBioAssayData_list
public BioAssayData_package.BioAssayData_list getBioAssayData_list()
- Get method for bioAssayData_list
addToBioAssayData_list
public void addToBioAssayData_list(BioAssayData bioAssayData)
- Method to add BioAssayData to BioAssayData_list
addToBioAssayData_list
public void addToBioAssayData_list(int position, BioAssayData bioAssayData)
- Method to add BioAssayData at position to BioAssayData_list
getFromBioAssayData_list
public BioAssayData getFromBioAssayData_list(int position)
- Method to get BioAssayData from BioAssayData_list
removeElementAtFromBioAssayData_list
public void removeElementAtFromBioAssayData_list(int position)
- Method to remove by position from BioAssayData_list
removeFromBioAssayData_list
public void removeFromBioAssayData_list(BioAssayData bioAssayData)
- Method to remove first BioAssayData from BioAssayData_list
setQuantitationTypeDimension_list
public void setQuantitationTypeDimension_list(BioAssayData_package.QuantitationTypeDimension_list quantitationTypeDimension_list)
- Set method for quantitationTypeDimension_list
getQuantitationTypeDimension_list
public BioAssayData_package.QuantitationTypeDimension_list getQuantitationTypeDimension_list()
- Get method for quantitationTypeDimension_list
addToQuantitationTypeDimension_list
public void addToQuantitationTypeDimension_list(QuantitationTypeDimension quantitationTypeDimension)
- Method to add QuantitationTypeDimension to
QuantitationTypeDimension_list
addToQuantitationTypeDimension_list
public void addToQuantitationTypeDimension_list(int position, QuantitationTypeDimension quantitationTypeDimension)
- Method to add QuantitationTypeDimension at position to
QuantitationTypeDimension_list
getFromQuantitationTypeDimension_list
public QuantitationTypeDimension getFromQuantitationTypeDimension_list(int position)
- Method to get QuantitationTypeDimension from
QuantitationTypeDimension_list
removeElementAtFromQuantitationTypeDimension_list
public void removeElementAtFromQuantitationTypeDimension_list(int position)
- Method to remove by position from QuantitationTypeDimension_list
removeFromQuantitationTypeDimension_list
public void removeFromQuantitationTypeDimension_list(QuantitationTypeDimension quantitationTypeDimension)
- Method to remove first QuantitationTypeDimension from
QuantitationTypeDimension_list
setDesignElementDimension_list
public void setDesignElementDimension_list(BioAssayData_package.DesignElementDimension_list designElementDimension_list)
- Set method for designElementDimension_list
getDesignElementDimension_list
public BioAssayData_package.DesignElementDimension_list getDesignElementDimension_list()
- Get method for designElementDimension_list
addToDesignElementDimension_list
public void addToDesignElementDimension_list(DesignElementDimension designElementDimension)
- Method to add DesignElementDimension to
DesignElementDimension_list
addToDesignElementDimension_list
public void addToDesignElementDimension_list(int position, DesignElementDimension designElementDimension)
- Method to add DesignElementDimension at position to
DesignElementDimension_list
getFromDesignElementDimension_list
public DesignElementDimension getFromDesignElementDimension_list(int position)
- Method to get DesignElementDimension from
DesignElementDimension_list
removeElementAtFromDesignElementDimension_list
public void removeElementAtFromDesignElementDimension_list(int position)
- Method to remove by position from DesignElementDimension_list
removeFromDesignElementDimension_list
public void removeFromDesignElementDimension_list(DesignElementDimension designElementDimension)
- Method to remove first DesignElementDimension from
DesignElementDimension_list
setDerivedBioAssayData_list
public void setDerivedBioAssayData_list(BioAssayData_package.DerivedBioAssayData_list derivedBioAssayData_list)
- Set method for derivedBioAssayData_list
getDerivedBioAssayData_list
public BioAssayData_package.DerivedBioAssayData_list getDerivedBioAssayData_list()
- Get method for derivedBioAssayData_list
addToDerivedBioAssayData_list
public void addToDerivedBioAssayData_list(DerivedBioAssayData derivedBioAssayData)
- Method to add DerivedBioAssayData to DerivedBioAssayData_list
addToDerivedBioAssayData_list
public void addToDerivedBioAssayData_list(int position, DerivedBioAssayData derivedBioAssayData)
- Method to add DerivedBioAssayData at position to
DerivedBioAssayData_list
getFromDerivedBioAssayData_list
public DerivedBioAssayData getFromDerivedBioAssayData_list(int position)
- Method to get DerivedBioAssayData from DerivedBioAssayData_list
removeElementAtFromDerivedBioAssayData_list
public void removeElementAtFromDerivedBioAssayData_list(int position)
- Method to remove by position from DerivedBioAssayData_list
removeFromDerivedBioAssayData_list
public void removeFromDerivedBioAssayData_list(DerivedBioAssayData derivedBioAssayData)
- Method to remove first DerivedBioAssayData from
DerivedBioAssayData_list
setMeasuredBioAssayData_list
public void setMeasuredBioAssayData_list(BioAssayData_package.MeasuredBioAssayData_list measuredBioAssayData_list)
- Set method for measuredBioAssayData_list
getMeasuredBioAssayData_list
public BioAssayData_package.MeasuredBioAssayData_list getMeasuredBioAssayData_list()
- Get method for measuredBioAssayData_list
addToMeasuredBioAssayData_list
public void addToMeasuredBioAssayData_list(MeasuredBioAssayData measuredBioAssayData)
- Method to add MeasuredBioAssayData to MeasuredBioAssayData_list
addToMeasuredBioAssayData_list
public void addToMeasuredBioAssayData_list(int position, MeasuredBioAssayData measuredBioAssayData)
- Method to add MeasuredBioAssayData at position to
MeasuredBioAssayData_list
getFromMeasuredBioAssayData_list
public MeasuredBioAssayData getFromMeasuredBioAssayData_list(int position)
- Method to get MeasuredBioAssayData from MeasuredBioAssayData_list
removeElementAtFromMeasuredBioAssayData_list
public void removeElementAtFromMeasuredBioAssayData_list(int position)
- Method to remove by position from MeasuredBioAssayData_list
removeFromMeasuredBioAssayData_list
public void removeFromMeasuredBioAssayData_list(MeasuredBioAssayData measuredBioAssayData)
- Method to remove first MeasuredBioAssayData from
MeasuredBioAssayData_list
setBioAssayDimension_list
public void setBioAssayDimension_list(BioAssayData_package.BioAssayDimension_list bioAssayDimension_list)
- Set method for bioAssayDimension_list
getBioAssayDimension_list
public BioAssayData_package.BioAssayDimension_list getBioAssayDimension_list()
- Get method for bioAssayDimension_list
addToBioAssayDimension_list
public void addToBioAssayDimension_list(BioAssayDimension bioAssayDimension)
- Method to add BioAssayDimension to BioAssayDimension_list
addToBioAssayDimension_list
public void addToBioAssayDimension_list(int position, BioAssayDimension bioAssayDimension)
- Method to add BioAssayDimension at position to
BioAssayDimension_list
getFromBioAssayDimension_list
public BioAssayDimension getFromBioAssayDimension_list(int position)
- Method to get BioAssayDimension from BioAssayDimension_list
removeElementAtFromBioAssayDimension_list
public void removeElementAtFromBioAssayDimension_list(int position)
- Method to remove by position from BioAssayDimension_list
removeFromBioAssayDimension_list
public void removeFromBioAssayDimension_list(BioAssayDimension bioAssayDimension)
- Method to remove first BioAssayDimension from
BioAssayDimension_list
setQuantitationTypeMap_list
public void setQuantitationTypeMap_list(BioAssayData_package.QuantitationTypeMap_list quantitationTypeMap_list)
- Set method for quantitationTypeMap_list
getQuantitationTypeMap_list
public BioAssayData_package.QuantitationTypeMap_list getQuantitationTypeMap_list()
- Get method for quantitationTypeMap_list
addToQuantitationTypeMap_list
public void addToQuantitationTypeMap_list(QuantitationTypeMap quantitationTypeMap)
- Method to add QuantitationTypeMap to QuantitationTypeMap_list
addToQuantitationTypeMap_list
public void addToQuantitationTypeMap_list(int position, QuantitationTypeMap quantitationTypeMap)
- Method to add QuantitationTypeMap at position to
QuantitationTypeMap_list
getFromQuantitationTypeMap_list
public QuantitationTypeMap getFromQuantitationTypeMap_list(int position)
- Method to get QuantitationTypeMap from QuantitationTypeMap_list
removeElementAtFromQuantitationTypeMap_list
public void removeElementAtFromQuantitationTypeMap_list(int position)
- Method to remove by position from QuantitationTypeMap_list
removeFromQuantitationTypeMap_list
public void removeFromQuantitationTypeMap_list(QuantitationTypeMap quantitationTypeMap)
- Method to remove first QuantitationTypeMap from
QuantitationTypeMap_list
setDesignElementMap_list
public void setDesignElementMap_list(BioAssayData_package.DesignElementMap_list designElementMap_list)
- Set method for designElementMap_list
getDesignElementMap_list
public BioAssayData_package.DesignElementMap_list getDesignElementMap_list()
- Get method for designElementMap_list
addToDesignElementMap_list
public void addToDesignElementMap_list(DesignElementMap designElementMap)
- Method to add DesignElementMap to DesignElementMap_list
addToDesignElementMap_list
public void addToDesignElementMap_list(int position, DesignElementMap designElementMap)
- Method to add DesignElementMap at position to
DesignElementMap_list
getFromDesignElementMap_list
public DesignElementMap getFromDesignElementMap_list(int position)
- Method to get DesignElementMap from DesignElementMap_list
removeElementAtFromDesignElementMap_list
public void removeElementAtFromDesignElementMap_list(int position)
- Method to remove by position from DesignElementMap_list
removeFromDesignElementMap_list
public void removeFromDesignElementMap_list(DesignElementMap designElementMap)
- Method to remove first DesignElementMap from
DesignElementMap_list
setBioAssayMap_list
public void setBioAssayMap_list(BioAssayData_package.BioAssayMap_list bioAssayMap_list)
- Set method for bioAssayMap_list
getBioAssayMap_list
public BioAssayData_package.BioAssayMap_list getBioAssayMap_list()
- Get method for bioAssayMap_list
addToBioAssayMap_list
public void addToBioAssayMap_list(BioAssayMap bioAssayMap)
- Method to add BioAssayMap to BioAssayMap_list
addToBioAssayMap_list
public void addToBioAssayMap_list(int position, BioAssayMap bioAssayMap)
- Method to add BioAssayMap at position to BioAssayMap_list
getFromBioAssayMap_list
public BioAssayMap getFromBioAssayMap_list(int position)
- Method to get BioAssayMap from BioAssayMap_list
removeElementAtFromBioAssayMap_list
public void removeElementAtFromBioAssayMap_list(int position)
- Method to remove by position from BioAssayMap_list
removeFromBioAssayMap_list
public void removeFromBioAssayMap_list(BioAssayMap bioAssayMap)
- Method to remove first BioAssayMap from BioAssayMap_list
setCompositeSequenceDimension_list
public void setCompositeSequenceDimension_list(BioAssayData_package.CompositeSequenceDimension_list compositeSequenceDimension_list)
- Set method for compositeSequenceDimension_list
getCompositeSequenceDimension_list
public BioAssayData_package.CompositeSequenceDimension_list getCompositeSequenceDimension_list()
- Get method for compositeSequenceDimension_list
addToCompositeSequenceDimension_list
public void addToCompositeSequenceDimension_list(CompositeSequenceDimension compositeSequenceDimension)
- Method to add CompositeSequenceDimension to
CompositeSequenceDimension_list
addToCompositeSequenceDimension_list
public void addToCompositeSequenceDimension_list(int position, CompositeSequenceDimension compositeSequenceDimension)
- Method to add CompositeSequenceDimension at position to
CompositeSequenceDimension_list
getFromCompositeSequenceDimension_list
public CompositeSequenceDimension getFromCompositeSequenceDimension_list(int position)
- Method to get CompositeSequenceDimension from
CompositeSequenceDimension_list
removeElementAtFromCompositeSequenceDimension_list
public void removeElementAtFromCompositeSequenceDimension_list(int position)
- Method to remove by position from CompositeSequenceDimension_list
removeFromCompositeSequenceDimension_list
public void removeFromCompositeSequenceDimension_list(CompositeSequenceDimension compositeSequenceDimension)
- Method to remove first CompositeSequenceDimension from
CompositeSequenceDimension_list
setReporterDimension_list
public void setReporterDimension_list(BioAssayData_package.ReporterDimension_list reporterDimension_list)
- Set method for reporterDimension_list
getReporterDimension_list
public BioAssayData_package.ReporterDimension_list getReporterDimension_list()
- Get method for reporterDimension_list
addToReporterDimension_list
public void addToReporterDimension_list(ReporterDimension reporterDimension)
- Method to add ReporterDimension to ReporterDimension_list
addToReporterDimension_list
public void addToReporterDimension_list(int position, ReporterDimension reporterDimension)
- Method to add ReporterDimension at position to
ReporterDimension_list
getFromReporterDimension_list
public ReporterDimension getFromReporterDimension_list(int position)
- Method to get ReporterDimension from ReporterDimension_list
removeElementAtFromReporterDimension_list
public void removeElementAtFromReporterDimension_list(int position)
- Method to remove by position from ReporterDimension_list
removeFromReporterDimension_list
public void removeFromReporterDimension_list(ReporterDimension reporterDimension)
- Method to remove first ReporterDimension from
ReporterDimension_list
setFeatureDimension_list
public void setFeatureDimension_list(BioAssayData_package.FeatureDimension_list featureDimension_list)
- Set method for featureDimension_list
getFeatureDimension_list
public BioAssayData_package.FeatureDimension_list getFeatureDimension_list()
- Get method for featureDimension_list
addToFeatureDimension_list
public void addToFeatureDimension_list(FeatureDimension featureDimension)
- Method to add FeatureDimension to FeatureDimension_list
addToFeatureDimension_list
public void addToFeatureDimension_list(int position, FeatureDimension featureDimension)
- Method to add FeatureDimension at position to
FeatureDimension_list
getFromFeatureDimension_list
public FeatureDimension getFromFeatureDimension_list(int position)
- Method to get FeatureDimension from FeatureDimension_list
removeElementAtFromFeatureDimension_list
public void removeElementAtFromFeatureDimension_list(int position)
- Method to remove by position from FeatureDimension_list
removeFromFeatureDimension_list
public void removeFromFeatureDimension_list(FeatureDimension featureDimension)
- Method to remove first FeatureDimension from
FeatureDimension_list
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