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org.biomage.BioAssayData
Class BioDataCube  view BioDataCube download BioDataCube.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioAssayData.BioDataValues
          extended byorg.biomage.BioAssayData.BioDataCube
All Implemented Interfaces:
org.biomage.Interface.HasPropertySets, java.io.Serializable

public class BioDataCube
extends BioDataValues
implements java.io.Serializable

A three-dimensional cube representation of the data.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
(package private)  java.lang.Object[][][] cube
          Three dimension array, indexed by the three dimensions to provide the data for the BioAssayData.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
BioDataCube()
          Default constructor.
BioDataCube(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 java.lang.Object[][][] getCube()
          Get method for cube
 void setCube(java.lang.Object[][][] cube)
          Set method for cube
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

cube

java.lang.Object[][][] cube
Three dimension array, indexed by the three dimensions to provide the data for the BioAssayData.

Constructor Detail

BioDataCube

public BioDataCube()
Default constructor.


BioDataCube

public BioDataCube(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class BioDataValues

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class BioDataValues

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class BioDataValues

setCube

public void setCube(java.lang.Object[][][] cube)
Set method for cube


getCube

public java.lang.Object[][][] getCube()
Get method for cube