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org.biomage.BioAssayData
Class BioDataValues  view BioDataValues download BioDataValues.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioAssayData.BioDataValues
All Implemented Interfaces:
org.biomage.Interface.HasPropertySets, java.io.Serializable
Direct Known Subclasses:
BioDataCube, BioDataTuples

public abstract class BioDataValues
extends org.biomage.Common.Extendable
implements java.io.Serializable

The actual values for the BioAssayCube.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
BioDataValues()
          Default constructor.
BioDataValues(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BioDataValues

public BioDataValues()
Default constructor.


BioDataValues

public BioDataValues(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.