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org.biomage.BioAssayData
Class DesignElementMapping  view DesignElementMapping download DesignElementMapping.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioAssayData.DesignElementMapping
All Implemented Interfaces:
org.biomage.Interface.HasDesignElementMaps, org.biomage.Interface.HasPropertySets, java.io.Serializable

public class DesignElementMapping
extends org.biomage.Common.Extendable
implements java.io.Serializable, org.biomage.Interface.HasDesignElementMaps

Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasDesignElementMaps
org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps
          The maps for the DesignElements.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
DesignElementMapping()
          Default constructor.
DesignElementMapping(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToDesignElementMaps(DesignElementMap designElementMap)
          Method to add DesignElementMap to DesignElementMaps_list
 void addToDesignElementMaps(int position, DesignElementMap designElementMap)
          Method to add DesignElementMap at position to DesignElementMaps_list
 org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()
          Get method for designElementMaps
 DesignElementMap getFromDesignElementMaps(int position)
          Method to get DesignElementMap from DesignElementMaps_list
 void removeElementAtFromDesignElementMaps(int position)
          Method to remove by position from DesignElementMaps_list
 void removeFromDesignElementMaps(DesignElementMap designElementMap)
          Method to remove first DesignElementMap from DesignElementMaps_list
 void setDesignElementMaps(org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps)
          Set method for designElementMaps
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

designElementMaps

private org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps
The maps for the DesignElements.

Constructor Detail

DesignElementMapping

public DesignElementMapping()
Default constructor.


DesignElementMapping

public DesignElementMapping(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setDesignElementMaps

public void setDesignElementMaps(org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps)
Set method for designElementMaps

Specified by:
setDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

getDesignElementMaps

public org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()
Get method for designElementMaps

Specified by:
getDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

addToDesignElementMaps

public void addToDesignElementMaps(DesignElementMap designElementMap)
Method to add DesignElementMap to DesignElementMaps_list

Specified by:
addToDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

addToDesignElementMaps

public void addToDesignElementMaps(int position,
                                   DesignElementMap designElementMap)
Method to add DesignElementMap at position to DesignElementMaps_list

Specified by:
addToDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

getFromDesignElementMaps

public DesignElementMap getFromDesignElementMaps(int position)
Method to get DesignElementMap from DesignElementMaps_list

Specified by:
getFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

removeElementAtFromDesignElementMaps

public void removeElementAtFromDesignElementMaps(int position)
Method to remove by position from DesignElementMaps_list

Specified by:
removeElementAtFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

removeFromDesignElementMaps

public void removeFromDesignElementMaps(DesignElementMap designElementMap)
Method to remove first DesignElementMap from DesignElementMaps_list

Specified by:
removeFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps