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org.biomage.BioAssayData
Class FeatureDimension  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.BioAssayData.DesignElementDimension
                  org.biomage.BioAssayData.FeatureDimension

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasContainedFeatures, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

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public class FeatureDimension

extends DesignElementDimension

implements java.io.Serializable, org.biomage.Interface.HasContainedFeatures

Specialized DesignElementDimension to hold Features.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasContainedFeatures

org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list	containedFeatures           The features for this dimension.

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

FeatureDimension()           Default constructor.

FeatureDimension(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToContainedFeatures(org.biomage.DesignElement.Feature feature)           Method to add Feature to ContainedFeatures_list
void	addToContainedFeatures(int position, org.biomage.DesignElement.Feature feature)           Method to add Feature at position to ContainedFeatures_list
org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list	getContainedFeatures()           Get method for containedFeatures
org.biomage.DesignElement.Feature	getFromContainedFeatures(int position)           Method to get Feature from ContainedFeatures_list
void	removeElementAtFromContainedFeatures(int position)           Method to remove by position from ContainedFeatures_list
void	removeFromContainedFeatures(org.biomage.DesignElement.Feature feature)           Method to remove first Feature from ContainedFeatures_list
void	setContainedFeatures(org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list containedFeatures)           Set method for containedFeatures
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

containedFeatures

private org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list containedFeatures

The features for this dimension.

Constructor Detail

FeatureDimension

public FeatureDimension()

Default constructor.

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FeatureDimension

public FeatureDimension(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class DesignElementDimension

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class DesignElementDimension

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class DesignElementDimension

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setContainedFeatures

public void setContainedFeatures(org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list containedFeatures)

Set method for containedFeatures

Specified by:

setContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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getContainedFeatures

public org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list getContainedFeatures()

Get method for containedFeatures

Specified by:

getContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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addToContainedFeatures

public void addToContainedFeatures(org.biomage.DesignElement.Feature feature)

Method to add Feature to ContainedFeatures_list

Specified by:

addToContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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addToContainedFeatures

public void addToContainedFeatures(int position,
                                   org.biomage.DesignElement.Feature feature)

Method to add Feature at position to ContainedFeatures_list

Specified by:

addToContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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getFromContainedFeatures

public org.biomage.DesignElement.Feature getFromContainedFeatures(int position)

Method to get Feature from ContainedFeatures_list

Specified by:

getFromContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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removeElementAtFromContainedFeatures

public void removeElementAtFromContainedFeatures(int position)

Method to remove by position from ContainedFeatures_list

Specified by:

removeElementAtFromContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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removeFromContainedFeatures

public void removeFromContainedFeatures(org.biomage.DesignElement.Feature feature)

Method to remove first Feature from ContainedFeatures_list

Specified by:

removeFromContainedFeatures in interface org.biomage.Interface.HasContainedFeatures

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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