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org.biomage.BioAssayData
Class QuantitationTypeMap  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.BioEvent.BioEvent
                  org.biomage.BioEvent.Map
                      org.biomage.BioAssayData.QuantitationTypeMap

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasProtocolApplications, org.biomage.Interface.HasSecurity, org.biomage.Interface.HasSourcesQuantitationType, org.biomage.Interface.HasTargetQuantitationType, java.io.Serializable

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public class QuantitationTypeMap

extends org.biomage.BioEvent.Map

implements java.io.Serializable, org.biomage.Interface.HasTargetQuantitationType, org.biomage.Interface.HasSourcesQuantitationType

A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasSourcesQuantitationType

org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list

 

Nested classes inherited from class org.biomage.Interface.HasProtocolApplications

org.biomage.Interface.HasProtocolApplications.ProtocolApplications_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list	sourcesQuantitationType           The QuantitationType sources for values for the transformation.
private  org.biomage.QuantitationType.QuantitationType	targetQuantitationType           The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol.

 

Fields inherited from class org.biomage.BioEvent.BioEvent

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

QuantitationTypeMap()           Default constructor.

QuantitationTypeMap(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToSourcesQuantitationType(int position, org.biomage.QuantitationType.QuantitationType quantitationType)           Method to add QuantitationType at position to SourcesQuantitationType_list
void	addToSourcesQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)           Method to add QuantitationType to SourcesQuantitationType_list
org.biomage.QuantitationType.QuantitationType	getFromSourcesQuantitationType(int position)           Method to get QuantitationType from SourcesQuantitationType_list
org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list	getSourcesQuantitationType()           Get method for sourcesQuantitationType
org.biomage.QuantitationType.QuantitationType	getTargetQuantitationType()           Get method for targetQuantitationType
void	removeElementAtFromSourcesQuantitationType(int position)           Method to remove by position from SourcesQuantitationType_list
void	removeFromSourcesQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)           Method to remove first QuantitationType from SourcesQuantitationType_list
void	setSourcesQuantitationType(org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list sourcesQuantitationType)           Set method for sourcesQuantitationType
void	setTargetQuantitationType(org.biomage.QuantitationType.QuantitationType targetQuantitationType)           Set method for targetQuantitationType
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.BioEvent.BioEvent

addToProtocolApplications, addToProtocolApplications, getFromProtocolApplications, getProtocolApplications, removeElementAtFromProtocolApplications, removeFromProtocolApplications, setProtocolApplications

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

targetQuantitationType

private org.biomage.QuantitationType.QuantitationType targetQuantitationType

The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol.

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sourcesQuantitationType

private org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list sourcesQuantitationType

The QuantitationType sources for values for the transformation.

Constructor Detail

QuantitationTypeMap

public QuantitationTypeMap()

Default constructor.

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QuantitationTypeMap

public QuantitationTypeMap(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setTargetQuantitationType

public void setTargetQuantitationType(org.biomage.QuantitationType.QuantitationType targetQuantitationType)

Set method for targetQuantitationType

Specified by:

setTargetQuantitationType in interface org.biomage.Interface.HasTargetQuantitationType

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getTargetQuantitationType

public org.biomage.QuantitationType.QuantitationType getTargetQuantitationType()

Get method for targetQuantitationType

Specified by:

getTargetQuantitationType in interface org.biomage.Interface.HasTargetQuantitationType

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setSourcesQuantitationType

public void setSourcesQuantitationType(org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list sourcesQuantitationType)

Set method for sourcesQuantitationType

Specified by:

setSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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getSourcesQuantitationType

public org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list getSourcesQuantitationType()

Get method for sourcesQuantitationType

Specified by:

getSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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addToSourcesQuantitationType

public void addToSourcesQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)

Method to add QuantitationType to SourcesQuantitationType_list

Specified by:

addToSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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addToSourcesQuantitationType

public void addToSourcesQuantitationType(int position,
                                         org.biomage.QuantitationType.QuantitationType quantitationType)

Method to add QuantitationType at position to SourcesQuantitationType_list

Specified by:

addToSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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getFromSourcesQuantitationType

public org.biomage.QuantitationType.QuantitationType getFromSourcesQuantitationType(int position)

Method to get QuantitationType from SourcesQuantitationType_list

Specified by:

getFromSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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removeElementAtFromSourcesQuantitationType

public void removeElementAtFromSourcesQuantitationType(int position)

Method to remove by position from SourcesQuantitationType_list

Specified by:

removeElementAtFromSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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removeFromSourcesQuantitationType

public void removeFromSourcesQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)

Method to remove first QuantitationType from SourcesQuantitationType_list

Specified by:

removeFromSourcesQuantitationType in interface org.biomage.Interface.HasSourcesQuantitationType

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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