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org.biomage.BioAssayData
Class QuantitationTypeMapping  view QuantitationTypeMapping download QuantitationTypeMapping.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioAssayData.QuantitationTypeMapping
All Implemented Interfaces:
org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasQuantitationTypeMaps, java.io.Serializable

public class QuantitationTypeMapping
extends org.biomage.Common.Extendable
implements java.io.Serializable, org.biomage.Interface.HasQuantitationTypeMaps

Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasQuantitationTypeMaps
org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps
          The maps for the QuantitationTypes.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
QuantitationTypeMapping()
          Default constructor.
QuantitationTypeMapping(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToQuantitationTypeMaps(int position, QuantitationTypeMap quantitationTypeMap)
          Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list
 void addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
          Method to add QuantitationTypeMap to QuantitationTypeMaps_list
 QuantitationTypeMap getFromQuantitationTypeMaps(int position)
          Method to get QuantitationTypeMap from QuantitationTypeMaps_list
 org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list getQuantitationTypeMaps()
          Get method for quantitationTypeMaps
 void removeElementAtFromQuantitationTypeMaps(int position)
          Method to remove by position from QuantitationTypeMaps_list
 void removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
          Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list
 void setQuantitationTypeMaps(org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)
          Set method for quantitationTypeMaps
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

quantitationTypeMaps

private org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps
The maps for the QuantitationTypes.

Constructor Detail

QuantitationTypeMapping

public QuantitationTypeMapping()
Default constructor.


QuantitationTypeMapping

public QuantitationTypeMapping(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setQuantitationTypeMaps

public void setQuantitationTypeMaps(org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)
Set method for quantitationTypeMaps

Specified by:
setQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

getQuantitationTypeMaps

public org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list getQuantitationTypeMaps()
Get method for quantitationTypeMaps

Specified by:
getQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap to QuantitationTypeMaps_list

Specified by:
addToQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(int position,
                                      QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list

Specified by:
addToQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

getFromQuantitationTypeMaps

public QuantitationTypeMap getFromQuantitationTypeMaps(int position)
Method to get QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:
getFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

removeElementAtFromQuantitationTypeMaps

public void removeElementAtFromQuantitationTypeMaps(int position)
Method to remove by position from QuantitationTypeMaps_list

Specified by:
removeElementAtFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

removeFromQuantitationTypeMaps

public void removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:
removeFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps