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org.biomage.BioMaterial
Class BioMaterialMeasurement  view BioMaterialMeasurement download BioMaterialMeasurement.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioMaterial.BioMaterialMeasurement
All Implemented Interfaces:
org.biomage.Interface.HasBioMaterial, org.biomage.Interface.HasMeasurement, org.biomage.Interface.HasPropertySets, java.io.Serializable

public class BioMaterialMeasurement
extends org.biomage.Common.Extendable
implements java.io.Serializable, org.biomage.Interface.HasBioMaterial, org.biomage.Interface.HasMeasurement

A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  BioMaterial bioMaterial
          A source BioMaterial for a treatment.
private  org.biomage.Measurement.Measurement measurement
          The amount of the BioMaterial.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
BioMaterialMeasurement()
          Default constructor.
BioMaterialMeasurement(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 BioMaterial getBioMaterial()
          Get method for bioMaterial
 org.biomage.Measurement.Measurement getMeasurement()
          Get method for measurement
 void setBioMaterial(BioMaterial bioMaterial)
          Set method for bioMaterial
 void setMeasurement(org.biomage.Measurement.Measurement measurement)
          Set method for measurement
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

bioMaterial

private BioMaterial bioMaterial
A source BioMaterial for a treatment.


measurement

private org.biomage.Measurement.Measurement measurement
The amount of the BioMaterial.

Constructor Detail

BioMaterialMeasurement

public BioMaterialMeasurement()
Default constructor.


BioMaterialMeasurement

public BioMaterialMeasurement(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setBioMaterial

public void setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial

Specified by:
setBioMaterial in interface org.biomage.Interface.HasBioMaterial

getBioMaterial

public BioMaterial getBioMaterial()
Get method for bioMaterial

Specified by:
getBioMaterial in interface org.biomage.Interface.HasBioMaterial

setMeasurement

public void setMeasurement(org.biomage.Measurement.Measurement measurement)
Set method for measurement

Specified by:
setMeasurement in interface org.biomage.Interface.HasMeasurement

getMeasurement

public org.biomage.Measurement.Measurement getMeasurement()
Get method for measurement

Specified by:
getMeasurement in interface org.biomage.Interface.HasMeasurement