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org.biomage.BioMaterial
Class CompoundMeasurement  view CompoundMeasurement download CompoundMeasurement.java

java.lang.Object
  extended byorg.biomage.Common.Extendable
      extended byorg.biomage.BioMaterial.CompoundMeasurement
All Implemented Interfaces:
org.biomage.Interface.HasCompound, org.biomage.Interface.HasMeasurement, org.biomage.Interface.HasPropertySets, java.io.Serializable

public class CompoundMeasurement
extends org.biomage.Common.Extendable
implements java.io.Serializable, org.biomage.Interface.HasCompound, org.biomage.Interface.HasMeasurement

A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.


Nested Class Summary
 
Nested classes inherited from class org.biomage.Interface.HasPropertySets
org.biomage.Interface.HasPropertySets.PropertySets_list
 
Field Summary
private  Compound compound
          A Compound to be used to create another Compound.
private  org.biomage.Measurement.Measurement measurement
          The amount of the Compound.
 
Fields inherited from class org.biomage.Common.Extendable
 
Constructor Summary
CompoundMeasurement()
          Default constructor.
CompoundMeasurement(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 Compound getCompound()
          Get method for compound
 org.biomage.Measurement.Measurement getMeasurement()
          Get method for measurement
 void setCompound(Compound compound)
          Set method for compound
 void setMeasurement(org.biomage.Measurement.Measurement measurement)
          Set method for measurement
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

compound

private Compound compound
A Compound to be used to create another Compound.


measurement

private org.biomage.Measurement.Measurement measurement
The amount of the Compound.

Constructor Detail

CompoundMeasurement

public CompoundMeasurement()
Default constructor.


CompoundMeasurement

public CompoundMeasurement(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setCompound

public void setCompound(Compound compound)
Set method for compound

Specified by:
setCompound in interface org.biomage.Interface.HasCompound

getCompound

public Compound getCompound()
Get method for compound

Specified by:
getCompound in interface org.biomage.Interface.HasCompound

setMeasurement

public void setMeasurement(org.biomage.Measurement.Measurement measurement)
Set method for measurement

Specified by:
setMeasurement in interface org.biomage.Interface.HasMeasurement

getMeasurement

public org.biomage.Measurement.Measurement getMeasurement()
Get method for measurement

Specified by:
getMeasurement in interface org.biomage.Interface.HasMeasurement