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org.biomage.QuantitationType
Class QuantitationType_package  

java.lang.Object
  org.biomage.QuantitationType.QuantitationType_package

All Implemented Interfaces:

java.io.Serializable

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public class QuantitationType_package

extends java.lang.Object

implements java.io.Serializable

This Package defines the classes for quantitations, such as measured and derived signal, error, and pvalue. The subclasses of StandardQuantitationType will be the best fit from FeatureExtraction or Transformation Protocol for the values obtained. Other values can be specified using SpecializedQuantitationType.

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Nested Class Summary
class	QuantitationType_package.ConfidenceIndicator_list           Inner list class for holding multiple entries for attribute confidenceIndicator_list.
class	QuantitationType_package.DerivedSignal_list           Inner list class for holding multiple entries for attribute derivedSignal_list.
class	QuantitationType_package.Error_list           Inner list class for holding multiple entries for attribute error_list.
class	QuantitationType_package.ExpectedValue_list           Inner list class for holding multiple entries for attribute expectedValue_list.
class	QuantitationType_package.MeasuredSignal_list           Inner list class for holding multiple entries for attribute measuredSignal_list.
class	QuantitationType_package.PresentAbsent_list           Inner list class for holding multiple entries for attribute presentAbsent_list.
class	QuantitationType_package.PValue_list           Inner list class for holding multiple entries for attribute pValue_list.
class	QuantitationType_package.QuantitationType_list           Inner list class for holding multiple entries for attribute quantitationType_list.
class	QuantitationType_package.Ratio_list           Inner list class for holding multiple entries for attribute ratio_list.
class	QuantitationType_package.SpecializedQuantitationType_list           Inner list class for holding multiple entries for attribute specializedQuantitationType_list.
class	QuantitationType_package.StandardQuantitationType_list           Inner list class for holding multiple entries for attribute standardQuantitationType_list.

 

Field Summary
QuantitationType_package.ConfidenceIndicator_list	confidenceIndicator_list           Indication of some measure of confidence for a standard quantitation type.
QuantitationType_package.DerivedSignal_list	derivedSignal_list           A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
QuantitationType_package.Error_list	error_list           Error measurement of a quantitation.
QuantitationType_package.ExpectedValue_list	expectedValue_list           Indication of what value is expected of the associated standard quantitation type.
QuantitationType_package.MeasuredSignal_list	measuredSignal_list           Best measure from feature extraction as to the presence and intensity of the signal.
QuantitationType_package.PresentAbsent_list	presentAbsent_list           Indicates relative presence or absence.
QuantitationType_package.PValue_list	pValue_list           Measurement of the accuracy of a quantitation.
QuantitationType_package.QuantitationType_list	quantitationType_list           A method for calculating a single datum of the matrix (e.g.
QuantitationType_package.Ratio_list	ratio_list           The ratio of two or more signals, typically between two channels.
QuantitationType_package.SpecializedQuantitationType_list	specializedQuantitationType_list           User defined quantitation type.
QuantitationType_package.StandardQuantitationType_list	standardQuantitationType_list           Superclass for the named quantitation type.

 

Constructor Summary

QuantitationType_package()           Default constructor.

QuantitationType_package(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)           Method to add ConfidenceIndicator to ConfidenceIndicator_list
void	addToConfidenceIndicator_list(int position, ConfidenceIndicator confidenceIndicator)           Method to add ConfidenceIndicator at position to ConfidenceIndicator_list
void	addToDerivedSignal_list(DerivedSignal derivedSignal)           Method to add DerivedSignal to DerivedSignal_list
void	addToDerivedSignal_list(int position, DerivedSignal derivedSignal)           Method to add DerivedSignal at position to DerivedSignal_list
void	addToError_list(Error error)           Method to add Error to Error_list
void	addToError_list(int position, Error error)           Method to add Error at position to Error_list
void	addToExpectedValue_list(ExpectedValue expectedValue)           Method to add ExpectedValue to ExpectedValue_list
void	addToExpectedValue_list(int position, ExpectedValue expectedValue)           Method to add ExpectedValue at position to ExpectedValue_list
void	addToMeasuredSignal_list(int position, MeasuredSignal measuredSignal)           Method to add MeasuredSignal at position to MeasuredSignal_list
void	addToMeasuredSignal_list(MeasuredSignal measuredSignal)           Method to add MeasuredSignal to MeasuredSignal_list
void	addToPresentAbsent_list(int position, PresentAbsent presentAbsent)           Method to add PresentAbsent at position to PresentAbsent_list
void	addToPresentAbsent_list(PresentAbsent presentAbsent)           Method to add PresentAbsent to PresentAbsent_list
void	addToPValue_list(int position, PValue pValue)           Method to add PValue at position to PValue_list
void	addToPValue_list(PValue pValue)           Method to add PValue to PValue_list
void	addToQuantitationType_list(int position, QuantitationType quantitationType)           Method to add QuantitationType at position to QuantitationType_list
void	addToQuantitationType_list(QuantitationType quantitationType)           Method to add QuantitationType to QuantitationType_list
void	addToRatio_list(int position, Ratio ratio)           Method to add Ratio at position to Ratio_list
void	addToRatio_list(Ratio ratio)           Method to add Ratio to Ratio_list
void	addToSpecializedQuantitationType_list(int position, SpecializedQuantitationType specializedQuantitationType)           Method to add SpecializedQuantitationType at position to SpecializedQuantitationType_list
void	addToSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)           Method to add SpecializedQuantitationType to SpecializedQuantitationType_list
void	addToStandardQuantitationType_list(int position, StandardQuantitationType standardQuantitationType)           Method to add StandardQuantitationType at position to StandardQuantitationType_list
void	addToStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)           Method to add StandardQuantitationType to StandardQuantitationType_list
QuantitationType_package.ConfidenceIndicator_list	getConfidenceIndicator_list()           Get method for confidenceIndicator_list
QuantitationType_package.DerivedSignal_list	getDerivedSignal_list()           Get method for derivedSignal_list
QuantitationType_package.Error_list	getError_list()           Get method for error_list
QuantitationType_package.ExpectedValue_list	getExpectedValue_list()           Get method for expectedValue_list
ConfidenceIndicator	getFromConfidenceIndicator_list(int position)           Method to get ConfidenceIndicator from ConfidenceIndicator_list
DerivedSignal	getFromDerivedSignal_list(int position)           Method to get DerivedSignal from DerivedSignal_list
Error	getFromError_list(int position)           Method to get Error from Error_list
ExpectedValue	getFromExpectedValue_list(int position)           Method to get ExpectedValue from ExpectedValue_list
MeasuredSignal	getFromMeasuredSignal_list(int position)           Method to get MeasuredSignal from MeasuredSignal_list
PresentAbsent	getFromPresentAbsent_list(int position)           Method to get PresentAbsent from PresentAbsent_list
PValue	getFromPValue_list(int position)           Method to get PValue from PValue_list
QuantitationType	getFromQuantitationType_list(int position)           Method to get QuantitationType from QuantitationType_list
Ratio	getFromRatio_list(int position)           Method to get Ratio from Ratio_list
SpecializedQuantitationType	getFromSpecializedQuantitationType_list(int position)           Method to get SpecializedQuantitationType from SpecializedQuantitationType_list
StandardQuantitationType	getFromStandardQuantitationType_list(int position)           Method to get StandardQuantitationType from StandardQuantitationType_list
QuantitationType_package.MeasuredSignal_list	getMeasuredSignal_list()           Get method for measuredSignal_list
QuantitationType_package.PresentAbsent_list	getPresentAbsent_list()           Get method for presentAbsent_list
QuantitationType_package.PValue_list	getPValue_list()           Get method for pValue_list
QuantitationType_package.QuantitationType_list	getQuantitationType_list()           Get method for quantitationType_list
QuantitationType_package.Ratio_list	getRatio_list()           Get method for ratio_list
QuantitationType_package.SpecializedQuantitationType_list	getSpecializedQuantitationType_list()           Get method for specializedQuantitationType_list
QuantitationType_package.StandardQuantitationType_list	getStandardQuantitationType_list()           Get method for standardQuantitationType_list
void	removeElementAtFromConfidenceIndicator_list(int position)           Method to remove by position from ConfidenceIndicator_list
void	removeElementAtFromDerivedSignal_list(int position)           Method to remove by position from DerivedSignal_list
void	removeElementAtFromError_list(int position)           Method to remove by position from Error_list
void	removeElementAtFromExpectedValue_list(int position)           Method to remove by position from ExpectedValue_list
void	removeElementAtFromMeasuredSignal_list(int position)           Method to remove by position from MeasuredSignal_list
void	removeElementAtFromPresentAbsent_list(int position)           Method to remove by position from PresentAbsent_list
void	removeElementAtFromPValue_list(int position)           Method to remove by position from PValue_list
void	removeElementAtFromQuantitationType_list(int position)           Method to remove by position from QuantitationType_list
void	removeElementAtFromRatio_list(int position)           Method to remove by position from Ratio_list
void	removeElementAtFromSpecializedQuantitationType_list(int position)           Method to remove by position from SpecializedQuantitationType_list
void	removeElementAtFromStandardQuantitationType_list(int position)           Method to remove by position from StandardQuantitationType_list
void	removeFromConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)           Method to remove first ConfidenceIndicator from ConfidenceIndicator_list
void	removeFromDerivedSignal_list(DerivedSignal derivedSignal)           Method to remove first DerivedSignal from DerivedSignal_list
void	removeFromError_list(Error error)           Method to remove first Error from Error_list
void	removeFromExpectedValue_list(ExpectedValue expectedValue)           Method to remove first ExpectedValue from ExpectedValue_list
void	removeFromMeasuredSignal_list(MeasuredSignal measuredSignal)           Method to remove first MeasuredSignal from MeasuredSignal_list
void	removeFromPresentAbsent_list(PresentAbsent presentAbsent)           Method to remove first PresentAbsent from PresentAbsent_list
void	removeFromPValue_list(PValue pValue)           Method to remove first PValue from PValue_list
void	removeFromQuantitationType_list(QuantitationType quantitationType)           Method to remove first QuantitationType from QuantitationType_list
void	removeFromRatio_list(Ratio ratio)           Method to remove first Ratio from Ratio_list
void	removeFromSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)           Method to remove first SpecializedQuantitationType from SpecializedQuantitationType_list
void	removeFromStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)           Method to remove first StandardQuantitationType from StandardQuantitationType_list
void	setConfidenceIndicator_list(QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list)           Set method for confidenceIndicator_list
void	setDerivedSignal_list(QuantitationType_package.DerivedSignal_list derivedSignal_list)           Set method for derivedSignal_list
void	setError_list(QuantitationType_package.Error_list error_list)           Set method for error_list
void	setExpectedValue_list(QuantitationType_package.ExpectedValue_list expectedValue_list)           Set method for expectedValue_list
void	setMeasuredSignal_list(QuantitationType_package.MeasuredSignal_list measuredSignal_list)           Set method for measuredSignal_list
void	setPresentAbsent_list(QuantitationType_package.PresentAbsent_list presentAbsent_list)           Set method for presentAbsent_list
void	setPValue_list(QuantitationType_package.PValue_list pValue_list)           Set method for pValue_list
void	setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)           Set method for quantitationType_list
void	setRatio_list(QuantitationType_package.Ratio_list ratio_list)           Set method for ratio_list
void	setSpecializedQuantitationType_list(QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list)           Set method for specializedQuantitationType_list
void	setStandardQuantitationType_list(QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list)           Set method for standardQuantitationType_list
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

standardQuantitationType_list

public QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list

Superclass for the named quantitation type. Useful for mapping to those languages that can use a fly-weight for processing the subclasses.

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quantitationType_list

public QuantitationType_package.QuantitationType_list quantitationType_list

A method for calculating a single datum of the matrix (e.g. raw intensity, background, error).

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specializedQuantitationType_list

public QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list

User defined quantitation type.

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derivedSignal_list

public QuantitationType_package.DerivedSignal_list derivedSignal_list

A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements. Of type float.

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measuredSignal_list

public QuantitationType_package.MeasuredSignal_list measuredSignal_list

Best measure from feature extraction as to the presence and intensity of the signal. Of type float.

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error_list

public QuantitationType_package.Error_list error_list

Error measurement of a quantitation. Of type float.

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pValue_list

public QuantitationType_package.PValue_list pValue_list

Measurement of the accuracy of a quantitation. Of type float.

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expectedValue_list

public QuantitationType_package.ExpectedValue_list expectedValue_list

Indication of what value is expected of the associated standard quantitation type.

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ratio_list

public QuantitationType_package.Ratio_list ratio_list

The ratio of two or more signals, typically between two channels. Of type float.

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confidenceIndicator_list

public QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list

Indication of some measure of confidence for a standard quantitation type.

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presentAbsent_list

public QuantitationType_package.PresentAbsent_list presentAbsent_list

Indicates relative presence or absence. From the enumeration AbsoluteCallTypeEnum {Present | Absent | Marginal | No call} or ComparisonCallTypeEnum {Increase I Marginal Increase | Decrease | Marginal Decrease | No change | No Call | Unknown }, as specified by the dataType.

Constructor Detail

QuantitationType_package

public QuantitationType_package()

Default constructor.

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QuantitationType_package

public QuantitationType_package(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setStandardQuantitationType_list

public void setStandardQuantitationType_list(QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list)

Set method for standardQuantitationType_list

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getStandardQuantitationType_list

public QuantitationType_package.StandardQuantitationType_list getStandardQuantitationType_list()

Get method for standardQuantitationType_list

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addToStandardQuantitationType_list

public void addToStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)

Method to add StandardQuantitationType to StandardQuantitationType_list

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addToStandardQuantitationType_list

public void addToStandardQuantitationType_list(int position,
                                               StandardQuantitationType standardQuantitationType)

Method to add StandardQuantitationType at position to StandardQuantitationType_list

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getFromStandardQuantitationType_list

public StandardQuantitationType getFromStandardQuantitationType_list(int position)

Method to get StandardQuantitationType from StandardQuantitationType_list

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removeElementAtFromStandardQuantitationType_list

public void removeElementAtFromStandardQuantitationType_list(int position)

Method to remove by position from StandardQuantitationType_list

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removeFromStandardQuantitationType_list

public void removeFromStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)

Method to remove first StandardQuantitationType from StandardQuantitationType_list

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setQuantitationType_list

public void setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)

Set method for quantitationType_list

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getQuantitationType_list

public QuantitationType_package.QuantitationType_list getQuantitationType_list()

Get method for quantitationType_list

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addToQuantitationType_list

public void addToQuantitationType_list(QuantitationType quantitationType)

Method to add QuantitationType to QuantitationType_list

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addToQuantitationType_list

public void addToQuantitationType_list(int position,
                                       QuantitationType quantitationType)

Method to add QuantitationType at position to QuantitationType_list

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getFromQuantitationType_list

public QuantitationType getFromQuantitationType_list(int position)

Method to get QuantitationType from QuantitationType_list

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removeElementAtFromQuantitationType_list

public void removeElementAtFromQuantitationType_list(int position)

Method to remove by position from QuantitationType_list

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removeFromQuantitationType_list

public void removeFromQuantitationType_list(QuantitationType quantitationType)

Method to remove first QuantitationType from QuantitationType_list

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setSpecializedQuantitationType_list

public void setSpecializedQuantitationType_list(QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list)

Set method for specializedQuantitationType_list

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getSpecializedQuantitationType_list

public QuantitationType_package.SpecializedQuantitationType_list getSpecializedQuantitationType_list()

Get method for specializedQuantitationType_list

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addToSpecializedQuantitationType_list

public void addToSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)

Method to add SpecializedQuantitationType to SpecializedQuantitationType_list

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addToSpecializedQuantitationType_list

public void addToSpecializedQuantitationType_list(int position,
                                                  SpecializedQuantitationType specializedQuantitationType)

Method to add SpecializedQuantitationType at position to SpecializedQuantitationType_list

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getFromSpecializedQuantitationType_list

public SpecializedQuantitationType getFromSpecializedQuantitationType_list(int position)

Method to get SpecializedQuantitationType from SpecializedQuantitationType_list

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removeElementAtFromSpecializedQuantitationType_list

public void removeElementAtFromSpecializedQuantitationType_list(int position)

Method to remove by position from SpecializedQuantitationType_list

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removeFromSpecializedQuantitationType_list

public void removeFromSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)

Method to remove first SpecializedQuantitationType from SpecializedQuantitationType_list

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setDerivedSignal_list

public void setDerivedSignal_list(QuantitationType_package.DerivedSignal_list derivedSignal_list)

Set method for derivedSignal_list

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getDerivedSignal_list

public QuantitationType_package.DerivedSignal_list getDerivedSignal_list()

Get method for derivedSignal_list

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addToDerivedSignal_list

public void addToDerivedSignal_list(DerivedSignal derivedSignal)

Method to add DerivedSignal to DerivedSignal_list

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addToDerivedSignal_list

public void addToDerivedSignal_list(int position,
                                    DerivedSignal derivedSignal)

Method to add DerivedSignal at position to DerivedSignal_list

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getFromDerivedSignal_list

public DerivedSignal getFromDerivedSignal_list(int position)

Method to get DerivedSignal from DerivedSignal_list

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removeElementAtFromDerivedSignal_list

public void removeElementAtFromDerivedSignal_list(int position)

Method to remove by position from DerivedSignal_list

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removeFromDerivedSignal_list

public void removeFromDerivedSignal_list(DerivedSignal derivedSignal)

Method to remove first DerivedSignal from DerivedSignal_list

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setMeasuredSignal_list

public void setMeasuredSignal_list(QuantitationType_package.MeasuredSignal_list measuredSignal_list)

Set method for measuredSignal_list

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getMeasuredSignal_list

public QuantitationType_package.MeasuredSignal_list getMeasuredSignal_list()

Get method for measuredSignal_list

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addToMeasuredSignal_list

public void addToMeasuredSignal_list(MeasuredSignal measuredSignal)

Method to add MeasuredSignal to MeasuredSignal_list

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addToMeasuredSignal_list

public void addToMeasuredSignal_list(int position,
                                     MeasuredSignal measuredSignal)

Method to add MeasuredSignal at position to MeasuredSignal_list

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getFromMeasuredSignal_list

public MeasuredSignal getFromMeasuredSignal_list(int position)

Method to get MeasuredSignal from MeasuredSignal_list

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removeElementAtFromMeasuredSignal_list

public void removeElementAtFromMeasuredSignal_list(int position)

Method to remove by position from MeasuredSignal_list

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removeFromMeasuredSignal_list

public void removeFromMeasuredSignal_list(MeasuredSignal measuredSignal)

Method to remove first MeasuredSignal from MeasuredSignal_list

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setError_list

public void setError_list(QuantitationType_package.Error_list error_list)

Set method for error_list

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getError_list

public QuantitationType_package.Error_list getError_list()

Get method for error_list

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addToError_list

public void addToError_list(Error error)

Method to add Error to Error_list

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addToError_list

public void addToError_list(int position,
                            Error error)

Method to add Error at position to Error_list

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getFromError_list

public Error getFromError_list(int position)

Method to get Error from Error_list

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removeElementAtFromError_list

public void removeElementAtFromError_list(int position)

Method to remove by position from Error_list

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removeFromError_list

public void removeFromError_list(Error error)

Method to remove first Error from Error_list

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setPValue_list

public void setPValue_list(QuantitationType_package.PValue_list pValue_list)

Set method for pValue_list

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getPValue_list

public QuantitationType_package.PValue_list getPValue_list()

Get method for pValue_list

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addToPValue_list

public void addToPValue_list(PValue pValue)

Method to add PValue to PValue_list

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addToPValue_list

public void addToPValue_list(int position,
                             PValue pValue)

Method to add PValue at position to PValue_list

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getFromPValue_list

public PValue getFromPValue_list(int position)

Method to get PValue from PValue_list

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removeElementAtFromPValue_list

public void removeElementAtFromPValue_list(int position)

Method to remove by position from PValue_list

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removeFromPValue_list

public void removeFromPValue_list(PValue pValue)

Method to remove first PValue from PValue_list

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setExpectedValue_list

public void setExpectedValue_list(QuantitationType_package.ExpectedValue_list expectedValue_list)

Set method for expectedValue_list

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getExpectedValue_list

public QuantitationType_package.ExpectedValue_list getExpectedValue_list()

Get method for expectedValue_list

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addToExpectedValue_list

public void addToExpectedValue_list(ExpectedValue expectedValue)

Method to add ExpectedValue to ExpectedValue_list

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addToExpectedValue_list

public void addToExpectedValue_list(int position,
                                    ExpectedValue expectedValue)

Method to add ExpectedValue at position to ExpectedValue_list

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getFromExpectedValue_list

public ExpectedValue getFromExpectedValue_list(int position)

Method to get ExpectedValue from ExpectedValue_list

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removeElementAtFromExpectedValue_list

public void removeElementAtFromExpectedValue_list(int position)

Method to remove by position from ExpectedValue_list

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removeFromExpectedValue_list

public void removeFromExpectedValue_list(ExpectedValue expectedValue)

Method to remove first ExpectedValue from ExpectedValue_list

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setRatio_list

public void setRatio_list(QuantitationType_package.Ratio_list ratio_list)

Set method for ratio_list

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getRatio_list

public QuantitationType_package.Ratio_list getRatio_list()

Get method for ratio_list

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addToRatio_list

public void addToRatio_list(Ratio ratio)

Method to add Ratio to Ratio_list

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addToRatio_list

public void addToRatio_list(int position,
                            Ratio ratio)

Method to add Ratio at position to Ratio_list

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getFromRatio_list

public Ratio getFromRatio_list(int position)

Method to get Ratio from Ratio_list

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removeElementAtFromRatio_list

public void removeElementAtFromRatio_list(int position)

Method to remove by position from Ratio_list

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removeFromRatio_list

public void removeFromRatio_list(Ratio ratio)

Method to remove first Ratio from Ratio_list

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setConfidenceIndicator_list

public void setConfidenceIndicator_list(QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list)

Set method for confidenceIndicator_list

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getConfidenceIndicator_list

public QuantitationType_package.ConfidenceIndicator_list getConfidenceIndicator_list()

Get method for confidenceIndicator_list

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addToConfidenceIndicator_list

public void addToConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)

Method to add ConfidenceIndicator to ConfidenceIndicator_list

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addToConfidenceIndicator_list

public void addToConfidenceIndicator_list(int position,
                                          ConfidenceIndicator confidenceIndicator)

Method to add ConfidenceIndicator at position to ConfidenceIndicator_list

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getFromConfidenceIndicator_list

public ConfidenceIndicator getFromConfidenceIndicator_list(int position)

Method to get ConfidenceIndicator from ConfidenceIndicator_list

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removeElementAtFromConfidenceIndicator_list

public void removeElementAtFromConfidenceIndicator_list(int position)

Method to remove by position from ConfidenceIndicator_list

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removeFromConfidenceIndicator_list

public void removeFromConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)

Method to remove first ConfidenceIndicator from ConfidenceIndicator_list

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setPresentAbsent_list

public void setPresentAbsent_list(QuantitationType_package.PresentAbsent_list presentAbsent_list)

Set method for presentAbsent_list

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getPresentAbsent_list

public QuantitationType_package.PresentAbsent_list getPresentAbsent_list()

Get method for presentAbsent_list

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addToPresentAbsent_list

public void addToPresentAbsent_list(PresentAbsent presentAbsent)

Method to add PresentAbsent to PresentAbsent_list

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addToPresentAbsent_list

public void addToPresentAbsent_list(int position,
                                    PresentAbsent presentAbsent)

Method to add PresentAbsent at position to PresentAbsent_list

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getFromPresentAbsent_list

public PresentAbsent getFromPresentAbsent_list(int position)

Method to get PresentAbsent from PresentAbsent_list

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removeElementAtFromPresentAbsent_list

public void removeElementAtFromPresentAbsent_list(int position)

Method to remove by position from PresentAbsent_list

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removeFromPresentAbsent_list

public void removeFromPresentAbsent_list(PresentAbsent presentAbsent)

Method to remove first PresentAbsent from PresentAbsent_list

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