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org.biomage.QuantitationType
Class QuantitationType_package  view QuantitationType_package download QuantitationType_package.java

java.lang.Object
  extended byorg.biomage.QuantitationType.QuantitationType_package
All Implemented Interfaces:
java.io.Serializable

public class QuantitationType_package
extends java.lang.Object
implements java.io.Serializable

This Package defines the classes for quantitations, such as measured and derived signal, error, and pvalue. The subclasses of StandardQuantitationType will be the best fit from FeatureExtraction or Transformation Protocol for the values obtained. Other values can be specified using SpecializedQuantitationType.


Nested Class Summary
 class QuantitationType_package.ConfidenceIndicator_list
          Inner list class for holding multiple entries for attribute confidenceIndicator_list.
 class QuantitationType_package.DerivedSignal_list
          Inner list class for holding multiple entries for attribute derivedSignal_list.
 class QuantitationType_package.Error_list
          Inner list class for holding multiple entries for attribute error_list.
 class QuantitationType_package.ExpectedValue_list
          Inner list class for holding multiple entries for attribute expectedValue_list.
 class QuantitationType_package.MeasuredSignal_list
          Inner list class for holding multiple entries for attribute measuredSignal_list.
 class QuantitationType_package.PresentAbsent_list
          Inner list class for holding multiple entries for attribute presentAbsent_list.
 class QuantitationType_package.PValue_list
          Inner list class for holding multiple entries for attribute pValue_list.
 class QuantitationType_package.QuantitationType_list
          Inner list class for holding multiple entries for attribute quantitationType_list.
 class QuantitationType_package.Ratio_list
          Inner list class for holding multiple entries for attribute ratio_list.
 class QuantitationType_package.SpecializedQuantitationType_list
          Inner list class for holding multiple entries for attribute specializedQuantitationType_list.
 class QuantitationType_package.StandardQuantitationType_list
          Inner list class for holding multiple entries for attribute standardQuantitationType_list.
 
Field Summary
 QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list
          Indication of some measure of confidence for a standard quantitation type.
 QuantitationType_package.DerivedSignal_list derivedSignal_list
          A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
 QuantitationType_package.Error_list error_list
          Error measurement of a quantitation.
 QuantitationType_package.ExpectedValue_list expectedValue_list
          Indication of what value is expected of the associated standard quantitation type.
 QuantitationType_package.MeasuredSignal_list measuredSignal_list
          Best measure from feature extraction as to the presence and intensity of the signal.
 QuantitationType_package.PresentAbsent_list presentAbsent_list
          Indicates relative presence or absence.
 QuantitationType_package.PValue_list pValue_list
          Measurement of the accuracy of a quantitation.
 QuantitationType_package.QuantitationType_list quantitationType_list
          A method for calculating a single datum of the matrix (e.g.
 QuantitationType_package.Ratio_list ratio_list
          The ratio of two or more signals, typically between two channels.
 QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list
          User defined quantitation type.
 QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list
          Superclass for the named quantitation type.
 
Constructor Summary
QuantitationType_package()
          Default constructor.
QuantitationType_package(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)
          Method to add ConfidenceIndicator to ConfidenceIndicator_list
 void addToConfidenceIndicator_list(int position, ConfidenceIndicator confidenceIndicator)
          Method to add ConfidenceIndicator at position to ConfidenceIndicator_list
 void addToDerivedSignal_list(DerivedSignal derivedSignal)
          Method to add DerivedSignal to DerivedSignal_list
 void addToDerivedSignal_list(int position, DerivedSignal derivedSignal)
          Method to add DerivedSignal at position to DerivedSignal_list
 void addToError_list(Error error)
          Method to add Error to Error_list
 void addToError_list(int position, Error error)
          Method to add Error at position to Error_list
 void addToExpectedValue_list(ExpectedValue expectedValue)
          Method to add ExpectedValue to ExpectedValue_list
 void addToExpectedValue_list(int position, ExpectedValue expectedValue)
          Method to add ExpectedValue at position to ExpectedValue_list
 void addToMeasuredSignal_list(int position, MeasuredSignal measuredSignal)
          Method to add MeasuredSignal at position to MeasuredSignal_list
 void addToMeasuredSignal_list(MeasuredSignal measuredSignal)
          Method to add MeasuredSignal to MeasuredSignal_list
 void addToPresentAbsent_list(int position, PresentAbsent presentAbsent)
          Method to add PresentAbsent at position to PresentAbsent_list
 void addToPresentAbsent_list(PresentAbsent presentAbsent)
          Method to add PresentAbsent to PresentAbsent_list
 void addToPValue_list(int position, PValue pValue)
          Method to add PValue at position to PValue_list
 void addToPValue_list(PValue pValue)
          Method to add PValue to PValue_list
 void addToQuantitationType_list(int position, QuantitationType quantitationType)
          Method to add QuantitationType at position to QuantitationType_list
 void addToQuantitationType_list(QuantitationType quantitationType)
          Method to add QuantitationType to QuantitationType_list
 void addToRatio_list(int position, Ratio ratio)
          Method to add Ratio at position to Ratio_list
 void addToRatio_list(Ratio ratio)
          Method to add Ratio to Ratio_list
 void addToSpecializedQuantitationType_list(int position, SpecializedQuantitationType specializedQuantitationType)
          Method to add SpecializedQuantitationType at position to SpecializedQuantitationType_list
 void addToSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)
          Method to add SpecializedQuantitationType to SpecializedQuantitationType_list
 void addToStandardQuantitationType_list(int position, StandardQuantitationType standardQuantitationType)
          Method to add StandardQuantitationType at position to StandardQuantitationType_list
 void addToStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)
          Method to add StandardQuantitationType to StandardQuantitationType_list
 QuantitationType_package.ConfidenceIndicator_list getConfidenceIndicator_list()
          Get method for confidenceIndicator_list
 QuantitationType_package.DerivedSignal_list getDerivedSignal_list()
          Get method for derivedSignal_list
 QuantitationType_package.Error_list getError_list()
          Get method for error_list
 QuantitationType_package.ExpectedValue_list getExpectedValue_list()
          Get method for expectedValue_list
 ConfidenceIndicator getFromConfidenceIndicator_list(int position)
          Method to get ConfidenceIndicator from ConfidenceIndicator_list
 DerivedSignal getFromDerivedSignal_list(int position)
          Method to get DerivedSignal from DerivedSignal_list
 Error getFromError_list(int position)
          Method to get Error from Error_list
 ExpectedValue getFromExpectedValue_list(int position)
          Method to get ExpectedValue from ExpectedValue_list
 MeasuredSignal getFromMeasuredSignal_list(int position)
          Method to get MeasuredSignal from MeasuredSignal_list
 PresentAbsent getFromPresentAbsent_list(int position)
          Method to get PresentAbsent from PresentAbsent_list
 PValue getFromPValue_list(int position)
          Method to get PValue from PValue_list
 QuantitationType getFromQuantitationType_list(int position)
          Method to get QuantitationType from QuantitationType_list
 Ratio getFromRatio_list(int position)
          Method to get Ratio from Ratio_list
 SpecializedQuantitationType getFromSpecializedQuantitationType_list(int position)
          Method to get SpecializedQuantitationType from SpecializedQuantitationType_list
 StandardQuantitationType getFromStandardQuantitationType_list(int position)
          Method to get StandardQuantitationType from StandardQuantitationType_list
 QuantitationType_package.MeasuredSignal_list getMeasuredSignal_list()
          Get method for measuredSignal_list
 QuantitationType_package.PresentAbsent_list getPresentAbsent_list()
          Get method for presentAbsent_list
 QuantitationType_package.PValue_list getPValue_list()
          Get method for pValue_list
 QuantitationType_package.QuantitationType_list getQuantitationType_list()
          Get method for quantitationType_list
 QuantitationType_package.Ratio_list getRatio_list()
          Get method for ratio_list
 QuantitationType_package.SpecializedQuantitationType_list getSpecializedQuantitationType_list()
          Get method for specializedQuantitationType_list
 QuantitationType_package.StandardQuantitationType_list getStandardQuantitationType_list()
          Get method for standardQuantitationType_list
 void removeElementAtFromConfidenceIndicator_list(int position)
          Method to remove by position from ConfidenceIndicator_list
 void removeElementAtFromDerivedSignal_list(int position)
          Method to remove by position from DerivedSignal_list
 void removeElementAtFromError_list(int position)
          Method to remove by position from Error_list
 void removeElementAtFromExpectedValue_list(int position)
          Method to remove by position from ExpectedValue_list
 void removeElementAtFromMeasuredSignal_list(int position)
          Method to remove by position from MeasuredSignal_list
 void removeElementAtFromPresentAbsent_list(int position)
          Method to remove by position from PresentAbsent_list
 void removeElementAtFromPValue_list(int position)
          Method to remove by position from PValue_list
 void removeElementAtFromQuantitationType_list(int position)
          Method to remove by position from QuantitationType_list
 void removeElementAtFromRatio_list(int position)
          Method to remove by position from Ratio_list
 void removeElementAtFromSpecializedQuantitationType_list(int position)
          Method to remove by position from SpecializedQuantitationType_list
 void removeElementAtFromStandardQuantitationType_list(int position)
          Method to remove by position from StandardQuantitationType_list
 void removeFromConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)
          Method to remove first ConfidenceIndicator from ConfidenceIndicator_list
 void removeFromDerivedSignal_list(DerivedSignal derivedSignal)
          Method to remove first DerivedSignal from DerivedSignal_list
 void removeFromError_list(Error error)
          Method to remove first Error from Error_list
 void removeFromExpectedValue_list(ExpectedValue expectedValue)
          Method to remove first ExpectedValue from ExpectedValue_list
 void removeFromMeasuredSignal_list(MeasuredSignal measuredSignal)
          Method to remove first MeasuredSignal from MeasuredSignal_list
 void removeFromPresentAbsent_list(PresentAbsent presentAbsent)
          Method to remove first PresentAbsent from PresentAbsent_list
 void removeFromPValue_list(PValue pValue)
          Method to remove first PValue from PValue_list
 void removeFromQuantitationType_list(QuantitationType quantitationType)
          Method to remove first QuantitationType from QuantitationType_list
 void removeFromRatio_list(Ratio ratio)
          Method to remove first Ratio from Ratio_list
 void removeFromSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)
          Method to remove first SpecializedQuantitationType from SpecializedQuantitationType_list
 void removeFromStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)
          Method to remove first StandardQuantitationType from StandardQuantitationType_list
 void setConfidenceIndicator_list(QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list)
          Set method for confidenceIndicator_list
 void setDerivedSignal_list(QuantitationType_package.DerivedSignal_list derivedSignal_list)
          Set method for derivedSignal_list
 void setError_list(QuantitationType_package.Error_list error_list)
          Set method for error_list
 void setExpectedValue_list(QuantitationType_package.ExpectedValue_list expectedValue_list)
          Set method for expectedValue_list
 void setMeasuredSignal_list(QuantitationType_package.MeasuredSignal_list measuredSignal_list)
          Set method for measuredSignal_list
 void setPresentAbsent_list(QuantitationType_package.PresentAbsent_list presentAbsent_list)
          Set method for presentAbsent_list
 void setPValue_list(QuantitationType_package.PValue_list pValue_list)
          Set method for pValue_list
 void setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)
          Set method for quantitationType_list
 void setRatio_list(QuantitationType_package.Ratio_list ratio_list)
          Set method for ratio_list
 void setSpecializedQuantitationType_list(QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list)
          Set method for specializedQuantitationType_list
 void setStandardQuantitationType_list(QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list)
          Set method for standardQuantitationType_list
 void writeAssociations(java.io.Writer out)
          writeAssociations
 void writeAttributes(java.io.Writer out)
          writeAttributes
 void writeMAGEML(java.io.Writer out)
          writeMAGEML
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

standardQuantitationType_list

public QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list
Superclass for the named quantitation type. Useful for mapping to those languages that can use a fly-weight for processing the subclasses.


quantitationType_list

public QuantitationType_package.QuantitationType_list quantitationType_list
A method for calculating a single datum of the matrix (e.g. raw intensity, background, error).


specializedQuantitationType_list

public QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list
User defined quantitation type.


derivedSignal_list

public QuantitationType_package.DerivedSignal_list derivedSignal_list
A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements. Of type float.


measuredSignal_list

public QuantitationType_package.MeasuredSignal_list measuredSignal_list
Best measure from feature extraction as to the presence and intensity of the signal. Of type float.


error_list

public QuantitationType_package.Error_list error_list
Error measurement of a quantitation. Of type float.


pValue_list

public QuantitationType_package.PValue_list pValue_list
Measurement of the accuracy of a quantitation. Of type float.


expectedValue_list

public QuantitationType_package.ExpectedValue_list expectedValue_list
Indication of what value is expected of the associated standard quantitation type.


ratio_list

public QuantitationType_package.Ratio_list ratio_list
The ratio of two or more signals, typically between two channels. Of type float.


confidenceIndicator_list

public QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list
Indication of some measure of confidence for a standard quantitation type.


presentAbsent_list

public QuantitationType_package.PresentAbsent_list presentAbsent_list
Indicates relative presence or absence. From the enumeration AbsoluteCallTypeEnum {Present | Absent | Marginal | No call} or ComparisonCallTypeEnum {Increase I Marginal Increase | Decrease | Marginal Decrease | No change | No Call | Unknown }, as specified by the dataType.

Constructor Detail

QuantitationType_package

public QuantitationType_package()
Default constructor.


QuantitationType_package

public QuantitationType_package(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.


writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.


writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.


setStandardQuantitationType_list

public void setStandardQuantitationType_list(QuantitationType_package.StandardQuantitationType_list standardQuantitationType_list)
Set method for standardQuantitationType_list


getStandardQuantitationType_list

public QuantitationType_package.StandardQuantitationType_list getStandardQuantitationType_list()
Get method for standardQuantitationType_list


addToStandardQuantitationType_list

public void addToStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)
Method to add StandardQuantitationType to StandardQuantitationType_list


addToStandardQuantitationType_list

public void addToStandardQuantitationType_list(int position,
                                               StandardQuantitationType standardQuantitationType)
Method to add StandardQuantitationType at position to StandardQuantitationType_list


getFromStandardQuantitationType_list

public StandardQuantitationType getFromStandardQuantitationType_list(int position)
Method to get StandardQuantitationType from StandardQuantitationType_list


removeElementAtFromStandardQuantitationType_list

public void removeElementAtFromStandardQuantitationType_list(int position)
Method to remove by position from StandardQuantitationType_list


removeFromStandardQuantitationType_list

public void removeFromStandardQuantitationType_list(StandardQuantitationType standardQuantitationType)
Method to remove first StandardQuantitationType from StandardQuantitationType_list


setQuantitationType_list

public void setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)
Set method for quantitationType_list


getQuantitationType_list

public QuantitationType_package.QuantitationType_list getQuantitationType_list()
Get method for quantitationType_list


addToQuantitationType_list

public void addToQuantitationType_list(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationType_list


addToQuantitationType_list

public void addToQuantitationType_list(int position,
                                       QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationType_list


getFromQuantitationType_list

public QuantitationType getFromQuantitationType_list(int position)
Method to get QuantitationType from QuantitationType_list


removeElementAtFromQuantitationType_list

public void removeElementAtFromQuantitationType_list(int position)
Method to remove by position from QuantitationType_list


removeFromQuantitationType_list

public void removeFromQuantitationType_list(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationType_list


setSpecializedQuantitationType_list

public void setSpecializedQuantitationType_list(QuantitationType_package.SpecializedQuantitationType_list specializedQuantitationType_list)
Set method for specializedQuantitationType_list


getSpecializedQuantitationType_list

public QuantitationType_package.SpecializedQuantitationType_list getSpecializedQuantitationType_list()
Get method for specializedQuantitationType_list


addToSpecializedQuantitationType_list

public void addToSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)
Method to add SpecializedQuantitationType to SpecializedQuantitationType_list


addToSpecializedQuantitationType_list

public void addToSpecializedQuantitationType_list(int position,
                                                  SpecializedQuantitationType specializedQuantitationType)
Method to add SpecializedQuantitationType at position to SpecializedQuantitationType_list


getFromSpecializedQuantitationType_list

public SpecializedQuantitationType getFromSpecializedQuantitationType_list(int position)
Method to get SpecializedQuantitationType from SpecializedQuantitationType_list


removeElementAtFromSpecializedQuantitationType_list

public void removeElementAtFromSpecializedQuantitationType_list(int position)
Method to remove by position from SpecializedQuantitationType_list


removeFromSpecializedQuantitationType_list

public void removeFromSpecializedQuantitationType_list(SpecializedQuantitationType specializedQuantitationType)
Method to remove first SpecializedQuantitationType from SpecializedQuantitationType_list


setDerivedSignal_list

public void setDerivedSignal_list(QuantitationType_package.DerivedSignal_list derivedSignal_list)
Set method for derivedSignal_list


getDerivedSignal_list

public QuantitationType_package.DerivedSignal_list getDerivedSignal_list()
Get method for derivedSignal_list


addToDerivedSignal_list

public void addToDerivedSignal_list(DerivedSignal derivedSignal)
Method to add DerivedSignal to DerivedSignal_list


addToDerivedSignal_list

public void addToDerivedSignal_list(int position,
                                    DerivedSignal derivedSignal)
Method to add DerivedSignal at position to DerivedSignal_list


getFromDerivedSignal_list

public DerivedSignal getFromDerivedSignal_list(int position)
Method to get DerivedSignal from DerivedSignal_list


removeElementAtFromDerivedSignal_list

public void removeElementAtFromDerivedSignal_list(int position)
Method to remove by position from DerivedSignal_list


removeFromDerivedSignal_list

public void removeFromDerivedSignal_list(DerivedSignal derivedSignal)
Method to remove first DerivedSignal from DerivedSignal_list


setMeasuredSignal_list

public void setMeasuredSignal_list(QuantitationType_package.MeasuredSignal_list measuredSignal_list)
Set method for measuredSignal_list


getMeasuredSignal_list

public QuantitationType_package.MeasuredSignal_list getMeasuredSignal_list()
Get method for measuredSignal_list


addToMeasuredSignal_list

public void addToMeasuredSignal_list(MeasuredSignal measuredSignal)
Method to add MeasuredSignal to MeasuredSignal_list


addToMeasuredSignal_list

public void addToMeasuredSignal_list(int position,
                                     MeasuredSignal measuredSignal)
Method to add MeasuredSignal at position to MeasuredSignal_list


getFromMeasuredSignal_list

public MeasuredSignal getFromMeasuredSignal_list(int position)
Method to get MeasuredSignal from MeasuredSignal_list


removeElementAtFromMeasuredSignal_list

public void removeElementAtFromMeasuredSignal_list(int position)
Method to remove by position from MeasuredSignal_list


removeFromMeasuredSignal_list

public void removeFromMeasuredSignal_list(MeasuredSignal measuredSignal)
Method to remove first MeasuredSignal from MeasuredSignal_list


setError_list

public void setError_list(QuantitationType_package.Error_list error_list)
Set method for error_list


getError_list

public QuantitationType_package.Error_list getError_list()
Get method for error_list


addToError_list

public void addToError_list(Error error)
Method to add Error to Error_list


addToError_list

public void addToError_list(int position,
                            Error error)
Method to add Error at position to Error_list


getFromError_list

public Error getFromError_list(int position)
Method to get Error from Error_list


removeElementAtFromError_list

public void removeElementAtFromError_list(int position)
Method to remove by position from Error_list


removeFromError_list

public void removeFromError_list(Error error)
Method to remove first Error from Error_list


setPValue_list

public void setPValue_list(QuantitationType_package.PValue_list pValue_list)
Set method for pValue_list


getPValue_list

public QuantitationType_package.PValue_list getPValue_list()
Get method for pValue_list


addToPValue_list

public void addToPValue_list(PValue pValue)
Method to add PValue to PValue_list


addToPValue_list

public void addToPValue_list(int position,
                             PValue pValue)
Method to add PValue at position to PValue_list


getFromPValue_list

public PValue getFromPValue_list(int position)
Method to get PValue from PValue_list


removeElementAtFromPValue_list

public void removeElementAtFromPValue_list(int position)
Method to remove by position from PValue_list


removeFromPValue_list

public void removeFromPValue_list(PValue pValue)
Method to remove first PValue from PValue_list


setExpectedValue_list

public void setExpectedValue_list(QuantitationType_package.ExpectedValue_list expectedValue_list)
Set method for expectedValue_list


getExpectedValue_list

public QuantitationType_package.ExpectedValue_list getExpectedValue_list()
Get method for expectedValue_list


addToExpectedValue_list

public void addToExpectedValue_list(ExpectedValue expectedValue)
Method to add ExpectedValue to ExpectedValue_list


addToExpectedValue_list

public void addToExpectedValue_list(int position,
                                    ExpectedValue expectedValue)
Method to add ExpectedValue at position to ExpectedValue_list


getFromExpectedValue_list

public ExpectedValue getFromExpectedValue_list(int position)
Method to get ExpectedValue from ExpectedValue_list


removeElementAtFromExpectedValue_list

public void removeElementAtFromExpectedValue_list(int position)
Method to remove by position from ExpectedValue_list


removeFromExpectedValue_list

public void removeFromExpectedValue_list(ExpectedValue expectedValue)
Method to remove first ExpectedValue from ExpectedValue_list


setRatio_list

public void setRatio_list(QuantitationType_package.Ratio_list ratio_list)
Set method for ratio_list


getRatio_list

public QuantitationType_package.Ratio_list getRatio_list()
Get method for ratio_list


addToRatio_list

public void addToRatio_list(Ratio ratio)
Method to add Ratio to Ratio_list


addToRatio_list

public void addToRatio_list(int position,
                            Ratio ratio)
Method to add Ratio at position to Ratio_list


getFromRatio_list

public Ratio getFromRatio_list(int position)
Method to get Ratio from Ratio_list


removeElementAtFromRatio_list

public void removeElementAtFromRatio_list(int position)
Method to remove by position from Ratio_list


removeFromRatio_list

public void removeFromRatio_list(Ratio ratio)
Method to remove first Ratio from Ratio_list


setConfidenceIndicator_list

public void setConfidenceIndicator_list(QuantitationType_package.ConfidenceIndicator_list confidenceIndicator_list)
Set method for confidenceIndicator_list


getConfidenceIndicator_list

public QuantitationType_package.ConfidenceIndicator_list getConfidenceIndicator_list()
Get method for confidenceIndicator_list


addToConfidenceIndicator_list

public void addToConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)
Method to add ConfidenceIndicator to ConfidenceIndicator_list


addToConfidenceIndicator_list

public void addToConfidenceIndicator_list(int position,
                                          ConfidenceIndicator confidenceIndicator)
Method to add ConfidenceIndicator at position to ConfidenceIndicator_list


getFromConfidenceIndicator_list

public ConfidenceIndicator getFromConfidenceIndicator_list(int position)
Method to get ConfidenceIndicator from ConfidenceIndicator_list


removeElementAtFromConfidenceIndicator_list

public void removeElementAtFromConfidenceIndicator_list(int position)
Method to remove by position from ConfidenceIndicator_list


removeFromConfidenceIndicator_list

public void removeFromConfidenceIndicator_list(ConfidenceIndicator confidenceIndicator)
Method to remove first ConfidenceIndicator from ConfidenceIndicator_list


setPresentAbsent_list

public void setPresentAbsent_list(QuantitationType_package.PresentAbsent_list presentAbsent_list)
Set method for presentAbsent_list


getPresentAbsent_list

public QuantitationType_package.PresentAbsent_list getPresentAbsent_list()
Get method for presentAbsent_list


addToPresentAbsent_list

public void addToPresentAbsent_list(PresentAbsent presentAbsent)
Method to add PresentAbsent to PresentAbsent_list


addToPresentAbsent_list

public void addToPresentAbsent_list(int position,
                                    PresentAbsent presentAbsent)
Method to add PresentAbsent at position to PresentAbsent_list


getFromPresentAbsent_list

public PresentAbsent getFromPresentAbsent_list(int position)
Method to get PresentAbsent from PresentAbsent_list


removeElementAtFromPresentAbsent_list

public void removeElementAtFromPresentAbsent_list(int position)
Method to remove by position from PresentAbsent_list


removeFromPresentAbsent_list

public void removeFromPresentAbsent_list(PresentAbsent presentAbsent)
Method to remove first PresentAbsent from PresentAbsent_list