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A

AbstractScuflAction - class org.embl.ebi.escience.scufl.talisman.AbstractScuflAction.
The superclass of all actions that operate on ScuflModel instances contained within ScuflModelBean objects in Talisman fields.
AbstractScuflAction() - Constructor for class org.embl.ebi.escience.scufl.talisman.AbstractScuflAction
 
AddDataConstraint - class org.embl.ebi.escience.scufl.talisman.AddDataConstraint.
Adds a new data constraint to the ScuflModel contained within the field named by 'model' in the Talisman page.
AddDataConstraint() - Constructor for class org.embl.ebi.escience.scufl.talisman.AddDataConstraint
 
AddProcessor - class org.embl.ebi.escience.scufl.talisman.AddProcessor.
Adds a new Processor to a ScuflModel within a Talisman BeanField.
AddProcessor() - Constructor for class org.embl.ebi.escience.scufl.talisman.AddProcessor
 

D

DestroyProcessor - class org.embl.ebi.escience.scufl.talisman.DestroyProcessor.
Remove a named processor from the ScuflModel held in a Talisman bean.
DestroyProcessor() - Constructor for class org.embl.ebi.escience.scufl.talisman.DestroyProcessor
 
dotView - Variable in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
 

G

getDot() - Method in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
Get the Dot description
getModel() - Method in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
Get the underlying model for this bean
getXScufl() - Method in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
Get the XML text

M

model - Variable in class org.embl.ebi.escience.scufl.talisman.AbstractScuflAction
 
model - Variable in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
 

O

org.embl.ebi.escience.scufl.talisman - package org.embl.ebi.escience.scufl.talisman
Provides the object model for the Simple Conceptual Unified Flow Language (Scufl).

P

PopulatePortList - class org.embl.ebi.escience.scufl.talisman.PopulatePortList.
Populates a named SelectionList with names of ports within a given processor in the model.
PopulatePortList() - Constructor for class org.embl.ebi.escience.scufl.talisman.PopulatePortList
 
PopulateProcessorList - class org.embl.ebi.escience.scufl.talisman.PopulateProcessorList.
Populates a named SelectionList with names of processors in the ScuflModel contained by the named bean field.
PopulateProcessorList() - Constructor for class org.embl.ebi.escience.scufl.talisman.PopulateProcessorList
 
PopulateServiceList - class org.embl.ebi.escience.scufl.talisman.PopulateServiceList.
Talisman action to populate a SelectionList with the service list returned by the Soaplab analysis factory.
PopulateServiceList() - Constructor for class org.embl.ebi.escience.scufl.talisman.PopulateServiceList
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.AbstractScuflAction
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.AddDataConstraint
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.AddProcessor
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.DestroyProcessor
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.PopulatePortList
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.PopulateProcessorList
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.PopulateServiceList
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.Scufl2XScufl
 
process(HttpServletRequest, HttpServletResponse, Action) - Method in class org.embl.ebi.escience.scufl.talisman.XScufl2Dot
 

S

Scufl2XScufl - class org.embl.ebi.escience.scufl.talisman.Scufl2XScufl.
Provides a Talisman action plugin that parses a Scufl definition found in a named 'input' field and writes the XScufl version of it out to a second 'output' field.
Scufl2XScufl() - Constructor for class org.embl.ebi.escience.scufl.talisman.Scufl2XScufl
 
ScuflModelBean - class org.embl.ebi.escience.scufl.talisman.ScuflModelBean.
This bean allows you to load a ScuflModel with attached XScuflView and DotView representations into a Talisman bean field.
ScuflModelBean() - Constructor for class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
Must have a default constructor to comply with the Talisman bean requirements.

X

XScufl2Dot - class org.embl.ebi.escience.scufl.talisman.XScufl2Dot.
Provides a Talisman action plugin that parses an XScufl definition found in a named 'input' field and writes the dot format representation of it into the 'output' field.
XScufl2Dot() - Constructor for class org.embl.ebi.escience.scufl.talisman.XScufl2Dot
 
xscuflView - Variable in class org.embl.ebi.escience.scufl.talisman.ScuflModelBean
 

A D G M O P S X